RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 TFECO14948 347 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 IFI30P13284 250 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 ZNF12P17014 697 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 CDKN2BP42772 138 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 HNMTP50135 292 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 MAXP61244 160 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 DLG2Q15700 870 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 CERCAMQ5T4B2 595 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 RNASEH2BQ5TBB1 312 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 COPS8Q99627 209 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 SMPD3Q9NY59 655 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 SAGE2PA6NJ88 616 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 DNM1LO00429 736 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 SLC9A3R1O14745 358 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 PGRMC2O15173 223 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 B4GALT4O60513 344 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 DNAJA2O60884 412 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 GPIP06744 558 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 DEFB128Q7Z7B8 93 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 FAM35AQ86V20 835 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 SLC4A11Q8NBS3 891 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 HJURPQ8NCD3 748 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 GPR156Q8NFN8 814 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 SUSD6Q92537 303 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 CLPTM1LQ96KA5 538 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 BCL2L14Q9BZR8 327 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 TM6SF2Q9BZW4 377 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 PDGFDQ9GZP0 370 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 HES2Q9Y543 173 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 GSAPA4D1B5 854 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 DPPA5A6NC42 116 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 RGS10O43665 173 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 HLA-DQA2P01906 255 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 PIRTP0C851 137 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 ADRA1BP35368 520 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 MSX2P35548 267 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 RBBP4Q09028 425 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 PLET1Q6UQ28 207 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 MON1BQ7L1V2 547 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 RASAL3Q86YV0 1011 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 C12orf29Q8N999 325 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 IL31RAQ8NI17 732 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 LRRN4Q8WUT4 740 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 UNC93B1Q9H1C4 597 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 TOR3AQ9H497 397 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 AASDHPPTQ9NRN7 309 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 CSH1P0DML2 217 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 CSH2P0DML3 217 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 MC4RP32245 332 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 PPM1LQ5SGD2 360 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 ZYG11AQ6WRX3 759 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 PIH1D2Q8WWB5 315 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 BSNDQ8WZ55 320 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 GAL3ST3Q96A11 431 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 FCRL2Q96LA5 508 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 IFT80Q9P2H3 777 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 ZBTB11O95625 1053 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 THRBP10828 461 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 CYP4B1P13584 511 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 GNPDA1P46926 289 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 TAF13Q15543 124 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 HECTD2Q5U5R9 776 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 ZNF613Q6PF04 617 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 DET1Q7L5Y6 550 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 PLD5Q8N7P1 536 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 COL26A1Q96A83 441 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 GPN1Q9HCN4 374 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 DISP2A7MBM2 1401 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 LRRIQ1Q96JM4 1722 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 CHURC1-FNTBB4DL54 471 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 AGPSO00116 658 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 LRCH4O75427 683 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 RPS2P15880 293 aaKnown RBP10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 LIMK2P53671 638 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 FAM92BQ6ZTR7 304 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 TPGS1Q6ZTW0 290 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 XYLT1Q86Y38 959 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 SPPL2CQ8IUH8 684 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 CHPFQ8IZ52 775 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 CLP1Q92989 425 aaKnown RBP10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 PPCDCQ96CD2 204 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 FBXO10Q9UK96 956 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 ST3GAL5Q9UNP4 418 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 NCKAP1Q9Y2A7 1128 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 MYPNQ86TC9 1320 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 TCRBV7S2A1N4TA0A589 114 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 MTHFRP42898 656 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 POLR2JP52435 117 aaKnown RBP10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 HADHBP55084 474 aaKnown RBP10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 TCEA2Q15560 299 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 EML3Q32P44 896 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 CNSTQ6PJW8 725 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 CCDC28AQ8IWP9 274 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 TRPV1Q8NER1 839 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 CXorf40AQ8TE69 158 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 SPOCK2Q92563 424 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 CPXM1Q96SM3 734 aa10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 RIOK2Q9BVS4 552 aaKnown RBP10.21□□□□□ -0.77
LIMCH1-203ENST00000396595 INTS10Q9NVR2 710 aaKnown RBP10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms