RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 LCP2Q13094 533 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 PLCL1Q15111 1095 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 FSCN1Q16658 493 aaKnown RBP12.64□□□□□ -0.39
SHMT1-205ENST00000395684 SETMARQ53H47 684 aaPredicted RBP12.64□□□□□ -0.39
SHMT1-205ENST00000395684 PYCR3Q53H96 274 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 TBPL2Q6SJ96 375 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 ABRAXAS1Q6UWZ7 409 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 PATL1Q86TB9 770 aaKnown RBP12.64□□□□□ -0.39
SHMT1-205ENST00000395684 PTRH1Q86Y79 214 aaKnown RBP12.64□□□□□ -0.39
SHMT1-205ENST00000395684 SPATA2LQ8IUW3 424 aaPredicted RBP12.64□□□□□ -0.39
SHMT1-205ENST00000395684 DHRSXQ8N5I4 330 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 RSPH1Q8WYR4 309 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 SERPINB11Q96P15 392 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 CYP2S1Q96SQ9 504 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 SEZ6LQ9BYH1 1024 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 ZYG11BQ9C0D3 744 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 POLR1BQ9H9Y6 1135 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 CD320Q9NPF0 282 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 CHCHD3Q9NX63 227 aaKnown RBP12.64□□□□□ -0.39
SHMT1-205ENST00000395684 SMPD3Q9NY59 655 aaPredicted RBP12.64□□□□□ -0.39
SHMT1-205ENST00000395684 FNIP2Q9P278 1114 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 TDRKHQ9Y2W6 561 aaKnown RBP12.64□□□□□ -0.39
SHMT1-205ENST00000395684 MED16Q9Y2X0 877 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 A0A1W2PPW3 197 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 MUSKO15146 869 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 KPNA6O60684 536 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 CHRNA1P02708 482 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 CYBBP04839 570 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 PRR35P0CG20 571 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 C7P10643 843 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 CAPGP40121 348 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 RPS9P46781 194 aaKnown RBP12.64□□□□□ -0.39
SHMT1-205ENST00000395684 UFM1P61960 85 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 PURAQ00577 322 aaKnown RBP12.64□□□□□ -0.39
SHMT1-205ENST00000395684 RCAN2Q14206 197 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 CCL14Q16627 93 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 MSANTD2Q6P1R3 559 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 TAF2Q6P1X5 1199 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 PAQR3Q6TCH7 311 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 SCIMPQ6UWF3 145 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 Q6ZNX1 250 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 SCN4BQ8IWT1 228 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 PAPD5Q8NDF8 572 aaKnown RBP12.64□□□□□ -0.39
SHMT1-205ENST00000395684 GPR150Q8NGU9 434 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 FATE1Q969F0 183 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 IGSF8Q969P0 613 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 DOK1Q99704 481 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 SLC30A3Q99726 388 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 SEMA3CQ99985 751 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 KCTD14Q9BQ13 255 aaPredicted RBP12.64□□□□□ -0.39
SHMT1-205ENST00000395684 AARSD1Q9BTE6 412 aaKnown RBP12.64□□□□□ -0.39
SHMT1-205ENST00000395684 ZNF408Q9H9D4 720 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 TMEM248Q9NWD8 314 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 ZNF225Q9UK10 706 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 CLEC11AQ9Y240 323 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 TLR6Q9Y2C9 796 aa12.64□□□□□ -0.39
SHMT1-205ENST00000395684 SUPT3HB4E1H0 165 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 GIPC1O14908 333 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 SUPT3HO75486 399 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 CD247P20963 164 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 DCKP27707 260 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 GALNT3Q14435 633 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 POLD3Q15054 466 aaPredicted RBP12.63□□□□□ -0.39
SHMT1-205ENST00000395684 FAM110CQ1W6H9 321 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 FGD3Q5JSP0 725 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 OGFOD2Q6N063 350 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 MRNIPQ6NTE8 343 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 TMEM26Q6ZUK4 368 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 KCTD8Q6ZWB6 473 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 FBXO39Q8N4B4 442 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 ZC3H15Q8WU90 426 aaKnown RBP12.63□□□□□ -0.39
SHMT1-205ENST00000395684 KIAA1191Q96A73 305 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 PLEKHG4BQ96PX9 1271 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 PIF1Q9H611 641 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 FAM50BQ9Y247 325 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 TRPV2Q9Y5S1 764 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 V9GYQ6 96 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 ZFC3H1O60293 1989 aaKnown RBP12.63□□□□□ -0.39
SHMT1-205ENST00000395684 M0QZ92 97 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 KERAO60938 352 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 FCGR1AP12314 374 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 CASP2P42575 452 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 KCNK10P57789 538 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 MAPRE1Q15691 268 aaKnown RBP12.63□□□□□ -0.39
SHMT1-205ENST00000395684 USP51Q70EK9 711 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 USP50Q70EL3 339 aaPredicted RBP12.63□□□□□ -0.39
SHMT1-205ENST00000395684 ANKRD23Q86SG2 305 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 CIR1Q86X95 450 aaPredicted RBP12.63□□□□□ -0.39
SHMT1-205ENST00000395684 OR4L1Q8NH43 312 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 STAG3L4Q8TBR4 150 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 MIPOL1Q8TD10 442 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 FAM210AQ96ND0 272 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 ZNF599Q96NL3 588 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 SEPHS2Q99611 448 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 PTPN18Q99952 460 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 KATNAL1Q9BW62 490 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 POPDC3Q9HBV1 291 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 INTS7Q9NVH2 962 aaKnown RBP12.63□□□□□ -0.39
SHMT1-205ENST00000395684 AIG1Q9NVV5 245 aa12.63□□□□□ -0.39
SHMT1-205ENST00000395684 ANAPC2Q9UJX6 822 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms