RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 DKK1O94907 266 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 TRIM16O95361 564 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 FUCA1P04066 466 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 CKMT2P17540 419 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 POLD2P49005 469 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 LMAN1P49257 510 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 TTC27Q6P3X3 843 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 SCG3Q8WXD2 468 aaKnown RBP21.55■■□□□ 1.04
CLN3-207ENST00000395653 GLYATL1Q969I3 302 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 APOLD1Q96LR9 279 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 TMEM168Q9H0V1 697 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 TMEM98Q9Y2Y6 226 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 OAS3Q9Y6K5 1087 aaKnown RBP21.55■■□□□ 1.04
CLN3-207ENST00000395653 NCOR2Q9Y618 2525 aa21.54■■□□□ 1.04
CLN3-207ENST00000395653 GOLGA6L10A0A0M3HER8 536 aa21.54■■□□□ 1.04
CLN3-207ENST00000395653 GLYATL1P3A0A0U1RQE8 302 aa21.54■■□□□ 1.04
CLN3-207ENST00000395653 CTAGE9A4FU28 777 aa21.54■■□□□ 1.04
CLN3-207ENST00000395653 GNPDA1P46926 289 aa21.54■■□□□ 1.04
CLN3-207ENST00000395653 CDH17Q12864 832 aa21.54■■□□□ 1.04
CLN3-207ENST00000395653 C6orf132Q5T0Z8 1188 aa21.54■■□□□ 1.04
CLN3-207ENST00000395653 SLCO6A1Q86UG4 719 aa21.54■■□□□ 1.04
CLN3-207ENST00000395653 PHYKPLQ8IUZ5 450 aa21.54■■□□□ 1.04
CLN3-207ENST00000395653 PTCD2Q8WV60 388 aaKnown RBP21.54■■□□□ 1.04
CLN3-207ENST00000395653 NCKIPSDQ9NZQ3 722 aa21.54■■□□□ 1.04
CLN3-207ENST00000395653 DOLKQ9UPQ8 538 aa21.54■■□□□ 1.04
CLN3-207ENST00000395653 PCDHGA1Q9Y5H4 931 aa21.54■■□□□ 1.04
CLN3-207ENST00000395653 SAR1BQ9Y6B6 198 aa21.54■■□□□ 1.04
CLN3-207ENST00000395653 LDB2O43679 373 aa21.53■■□□□ 1.04
CLN3-207ENST00000395653 PHF2O75151 1096 aa21.53■■□□□ 1.04
CLN3-207ENST00000395653 SLC25A14O95258 325 aaPredicted RBP21.53■■□□□ 1.04
CLN3-207ENST00000395653 ASMTLO95671 621 aa21.53■■□□□ 1.04
CLN3-207ENST00000395653 APRTP07741 180 aa21.53■■□□□ 1.04
CLN3-207ENST00000395653 CKMT1AP12532 417 aa21.53■■□□□ 1.04
CLN3-207ENST00000395653 ACP1P24666 158 aa21.53■■□□□ 1.04
CLN3-207ENST00000395653 COILP38432 576 aaPredicted RBP21.53■■□□□ 1.04
CLN3-207ENST00000395653 ACADVLP49748 655 aa21.53■■□□□ 1.04
CLN3-207ENST00000395653 DAB2P98082 770 aa21.53■■□□□ 1.04
CLN3-207ENST00000395653 DNAJC3Q13217 504 aa21.53■■□□□ 1.04
CLN3-207ENST00000395653 ATP13A5Q4VNC0 1218 aa21.53■■□□□ 1.04
CLN3-207ENST00000395653 CCDC137Q6PK04 289 aaKnown RBP21.53■■□□□ 1.04
CLN3-207ENST00000395653 OR4K2Q8NGD2 314 aa21.53■■□□□ 1.04
CLN3-207ENST00000395653 GPBAR1Q8TDU6 330 aa21.53■■□□□ 1.04
CLN3-207ENST00000395653 ADAMTS14Q8WXS8 1223 aa21.53■■□□□ 1.04
CLN3-207ENST00000395653 BOCQ9BWV1 1114 aa21.53■■□□□ 1.04
CLN3-207ENST00000395653 RMI1Q9H9A7 625 aa21.53■■□□□ 1.04
CLN3-207ENST00000395653 EIF2B3Q9NR50 452 aaKnown RBP21.53■■□□□ 1.04
CLN3-207ENST00000395653 EVA1BQ9NVM1 165 aa21.53■■□□□ 1.04
CLN3-207ENST00000395653 GPR89AB7ZAQ6 455 aa21.52■■□□□ 1.04
CLN3-207ENST00000395653 GPR89BP0CG08 455 aa21.52■■□□□ 1.04
CLN3-207ENST00000395653 PMLP29590 882 aa21.52■■□□□ 1.04
CLN3-207ENST00000395653 FNTAP49354 379 aa21.52■■□□□ 1.04
CLN3-207ENST00000395653 ZNF140P52738 457 aaPredicted RBP21.52■■□□□ 1.04
CLN3-207ENST00000395653 ILF3Q12906 894 aaKnown RBP eCLIP21.52■■□□□ 1.04
CLN3-207ENST00000395653 ILKQ13418 452 aa21.52■■□□□ 1.04
CLN3-207ENST00000395653 ITGA9Q13797 1035 aa21.52■■□□□ 1.04
CLN3-207ENST00000395653 PTPRCAPQ14761 206 aa21.52■■□□□ 1.04
CLN3-207ENST00000395653 PYCR3Q53H96 274 aa21.52■■□□□ 1.04
CLN3-207ENST00000395653 FAM151BQ6UXP7 276 aa21.52■■□□□ 1.04
CLN3-207ENST00000395653 GALNT13Q8IUC8 556 aa21.52■■□□□ 1.04
CLN3-207ENST00000395653 DNAAF3Q8N9W5 541 aa21.52■■□□□ 1.04
CLN3-207ENST00000395653 OR52K1Q8NGK4 314 aa21.52■■□□□ 1.04
CLN3-207ENST00000395653 GLMNQ92990 594 aa21.52■■□□□ 1.04
CLN3-207ENST00000395653 OR2M4Q96R27 311 aa21.52■■□□□ 1.04
CLN3-207ENST00000395653 GSDMCQ9BYG8 508 aa21.52■■□□□ 1.04
CLN3-207ENST00000395653 TRIM39Q9HCM9 518 aa21.52■■□□□ 1.04
CLN3-207ENST00000395653 APPL1Q9UKG1 709 aa21.52■■□□□ 1.04
CLN3-207ENST00000395653 KCTD3Q9Y597 815 aa21.52■■□□□ 1.04
CLN3-207ENST00000395653 LY6G6EA0A0G2JKS1 128 aa21.51■■□□□ 1.03
CLN3-207ENST00000395653 GAPDHSO14556 408 aaPredicted RBP21.51■■□□□ 1.03
CLN3-207ENST00000395653 DNAJC6O75061 913 aa21.51■■□□□ 1.03
CLN3-207ENST00000395653 RFPL3O75679 317 aa21.51■■□□□ 1.03
CLN3-207ENST00000395653 CDK4P11802 303 aa21.51■■□□□ 1.03
CLN3-207ENST00000395653 TPH1P17752 444 aa21.51■■□□□ 1.03
CLN3-207ENST00000395653 ADCY8P40145 1251 aa21.51■■□□□ 1.03
CLN3-207ENST00000395653 HADHAP40939 763 aa21.51■■□□□ 1.03
CLN3-207ENST00000395653 DUSP3P51452 185 aaPredicted RBP21.51■■□□□ 1.03
CLN3-207ENST00000395653 BASP1P80723 227 aaKnown RBP21.51■■□□□ 1.03
CLN3-207ENST00000395653 LRP8Q14114 963 aa21.51■■□□□ 1.03
CLN3-207ENST00000395653 TCEA2Q15560 299 aa21.51■■□□□ 1.03
CLN3-207ENST00000395653 CHRNA6Q15825 494 aa21.51■■□□□ 1.03
CLN3-207ENST00000395653 PPP1R21Q6ZMI0 780 aa21.51■■□□□ 1.03
CLN3-207ENST00000395653 MARK2Q7KZI7 788 aaKnown RBP21.51■■□□□ 1.03
CLN3-207ENST00000395653 TAF8Q7Z7C8 310 aa21.51■■□□□ 1.03
CLN3-207ENST00000395653 C17orf53Q8N3J3 647 aaPredicted RBP21.51■■□□□ 1.03
CLN3-207ENST00000395653 PNPLA1Q8N8W4 532 aa21.51■■□□□ 1.03
CLN3-207ENST00000395653 SUDS3Q9H7L9 328 aaPredicted RBP21.51■■□□□ 1.03
CLN3-207ENST00000395653 CASS4Q9NQ75 786 aa21.51■■□□□ 1.03
CLN3-207ENST00000395653 SMOXQ9NWM0 555 aa21.51■■□□□ 1.03
CLN3-207ENST00000395653 PIH1D1Q9NWS0 290 aaKnown RBP21.51■■□□□ 1.03
CLN3-207ENST00000395653 TMPRSS11EQ9UL52 423 aa21.51■■□□□ 1.03
CLN3-207ENST00000395653 U3KQA8 63 aa21.51■■□□□ 1.03
CLN3-207ENST00000395653 ZNF106Q9H2Y7 1883 aaKnown RBP21.51■■□□□ 1.03
CLN3-207ENST00000395653 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP21.5■■□□□ 1.03
CLN3-207ENST00000395653 FANCGO15287 622 aa21.5■■□□□ 1.03
CLN3-207ENST00000395653 NUAK1O60285 661 aa21.5■■□□□ 1.03
CLN3-207ENST00000395653 GAS8O95995 478 aa21.5■■□□□ 1.03
CLN3-207ENST00000395653 KRT14P02533 472 aa21.5■■□□□ 1.03
CLN3-207ENST00000395653 POU6F1Q14863 301 aa21.5■■□□□ 1.03
CLN3-207ENST00000395653 RAB44Q7Z6P3 723 aaPredicted RBP21.5■■□□□ 1.03
CLN3-207ENST00000395653 CREG2Q8IUH2 290 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms