RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 PBRM1Q86U86 1689 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 H0Y858 1186 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 HOXA2O43364 376 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 LATS1O95835 1130 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 ITGB1P05556 798 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 GRIA1P42261 906 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 IDNKQ5T6J7 187 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 CPTPQ5TA50 214 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 ISLR2Q6UXK2 745 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 GPR180Q86V85 440 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 ELAC1Q9H777 363 aaKnown RBP13.36□□□□□ -0.27
USP49-203ENST00000394253 C14orf105Q9NVL8 296 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 BORCS7-ASMTA0A0B4J1R7 106 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 THOP1P52888 689 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 GNG2P59768 71 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 TLE3Q04726 772 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 RETSATQ6NUM9 610 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 FAM83HQ6ZRV2 1179 aaPredicted RBP13.36□□□□□ -0.27
USP49-203ENST00000394253 DENND1CQ8IV53 801 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 PMM1Q92871 262 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 BORCS7Q96B45 105 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 LENG9Q96B70 501 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 PBDC1Q9BVG4 233 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 C3orf14Q9HBI5 128 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 SOHLH2Q9NX45 425 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 ANXA3P12429 323 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 SLC12A3P55017 1021 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 UBAP2LQ14157 1087 aaKnown RBP13.36□□□□□ -0.27
USP49-203ENST00000394253 KCTD7Q96MP8 289 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 ANKHQ9HCJ1 492 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 LYARQ9NX58 379 aaKnown RBP13.36□□□□□ -0.27
USP49-203ENST00000394253 TLX3O43711 291 aaPredicted RBP13.36□□□□□ -0.27
USP49-203ENST00000394253 GLI1P08151 1106 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 FXR2P51116 673 aaKnown RBP eCLIP13.36□□□□□ -0.27
USP49-203ENST00000394253 SERPINA13PQ6UXR4 307 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 TERB2Q8NHR7 220 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 ALG9Q9H6U8 611 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 C1orf109Q9NX04 203 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 TMEM260Q9NX78 707 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 ZNF226Q9NYT6 803 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 IFT52Q9Y366 437 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 DOCK8Q8NF50 2099 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 POLR1CO15160 346 aaPredicted RBP13.36□□□□□ -0.27
USP49-203ENST00000394253 TBX1O43435 398 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 B3GAT3O94766 335 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 STAG3L1P0CL83 205 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 LUMP51884 338 aaPredicted RBP13.36□□□□□ -0.27
USP49-203ENST00000394253 RPA4Q13156 261 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 AKR1C8PQ5T2L2 129 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 SKA3Q8IX90 412 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 PIGXQ8TBF5 258 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 NRP2O60462 931 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 IFNA17P01571 189 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 NKX6-1P78426 367 aaPredicted RBP13.36□□□□□ -0.27
USP49-203ENST00000394253 C7orf50Q9BRJ6 194 aaKnown RBP13.36□□□□□ -0.27
USP49-203ENST00000394253 OR2B2Q9GZK3 357 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 CPDO75976 1380 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 C2CD2LO14523 706 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 MGAT1P26572 445 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 KCNJ2P63252 427 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 NFE2Q16621 373 aaPredicted RBP13.36□□□□□ -0.27
USP49-203ENST00000394253 DSELQ8IZU8 1212 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 ZFP3Q96NJ6 502 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 PDP1Q9P0J1 537 aaPredicted RBP13.36□□□□□ -0.27
USP49-203ENST00000394253 MED31Q9Y3C7 131 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 RAP2CQ9Y3L5 183 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 MYO5BQ9ULV0 1848 aa13.36□□□□□ -0.27
USP49-203ENST00000394253 PRRC2BQ5JSZ5 2229 aaKnown RBP13.36□□□□□ -0.27
USP49-203ENST00000394253 ZNF335Q9H4Z2 1342 aaPredicted RBP13.36□□□□□ -0.27
USP49-203ENST00000394253 TVP23AA6NH52 213 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 GH1P01241 217 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 ZNF268Q14587 947 aaPredicted RBP13.35□□□□□ -0.27
USP49-203ENST00000394253 ZSCAN1Q8NBB4 408 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 BPIFB1Q8TDL5 484 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 DPAGT1Q9H3H5 408 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 NARSO43776 548 aaKnown RBP13.35□□□□□ -0.27
USP49-203ENST00000394253 SLC15A1P46059 708 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 ZNF283Q8N7M2 679 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 CIPCQ9C0C6 399 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 PLB1Q6P1J6 1458 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 FGF10O15520 208 aaPredicted RBP13.35□□□□□ -0.27
USP49-203ENST00000394253 TFPIP10646 304 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 XKR6Q5GH73 641 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 EFCAB12Q6NXP0 572 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 C1orf186Q6ZWK4 172 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 AENQ8WTP8 325 aaKnown RBP13.35□□□□□ -0.27
USP49-203ENST00000394253 CLIP3Q96DZ5 547 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 ZNF668Q96K58 619 aaPredicted RBP13.35□□□□□ -0.27
USP49-203ENST00000394253 FARSBQ9NSD9 589 aaKnown RBP13.35□□□□□ -0.27
USP49-203ENST00000394253 PDE10AQ9Y233 779 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 LOC102724428A0A0B4J2F2 783 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 SPTLC1O15269 473 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 HDAC3O15379 428 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 CCR3P51677 355 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 CCNHP51946 323 aaPredicted RBP13.35□□□□□ -0.27
USP49-203ENST00000394253 SIK1P57059 783 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 SLC25A3Q00325 362 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 IRF8Q02556 426 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 EFEMP1Q12805 493 aa13.35□□□□□ -0.27
USP49-203ENST00000394253 DCST1Q5T197 706 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms