RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 ZNF423Q2M1K9 1284 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 KIF19Q2TAC6 998 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 PIGGQ5H8A4 983 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 RNF19BQ6ZMZ0 732 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 GOLM1Q8NBJ4 401 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 BHLHE22Q8NFJ8 381 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-204ENST00000392003 HEPHQ9BQS7 1158 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 SLC25A23Q9BV35 468 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 ZDHHC7Q9NXF8 308 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 ARL5AQ9Y689 179 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 SLC38A8A6NNN8 435 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 IGLV3-27P01718 113 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 SNRPB2P08579 225 aaKnown RBP9.61□□□□□ -0.87
COL6A3-204ENST00000392003 TCN1P20061 433 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-204ENST00000392003 FGFR3P22607 806 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 ATXN3P54252 364 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-204ENST00000392003 USP41Q3LFD5 358 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 SFT2D3Q587I9 215 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 WDR45BQ5MNZ6 344 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 TRAF7Q6Q0C0 670 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 PIM3Q86V86 326 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 CLYBLQ8N0X4 340 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 PTGR2Q8N8N7 351 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-204ENST00000392003 OR13C4Q8NGS5 318 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 SPATA16Q9BXB7 569 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 QPCTLQ9NXS2 382 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 HACD3Q9P035 362 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-204ENST00000392003 TCAF2A6NFQ2 919 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 C2orf81A6NN90 581 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 MTRF1O75570 445 aaKnown RBP9.61□□□□□ -0.87
COL6A3-204ENST00000392003 SRP72O76094 671 aaKnown RBP9.61□□□□□ -0.87
COL6A3-204ENST00000392003 RHOCP08134 193 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 TSPAN8P19075 237 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 MSX2P35548 267 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-204ENST00000392003 KCNQ1P51787 676 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 HERVK_113P63132 956 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 EIF2B5Q13144 721 aaKnown RBP9.61□□□□□ -0.87
COL6A3-204ENST00000392003 ZNF177Q13360 481 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-204ENST00000392003 E2F2Q14209 437 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 RPS6KA2Q15349 733 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 RTP2Q5QGT7 225 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 ZNF678Q5SXM1 525 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 RPS27LQ71UM5 84 aaKnown RBP9.61□□□□□ -0.87
COL6A3-204ENST00000392003 ISCA2Q86U28 154 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 PCDH20Q8N6Y1 951 aaKnown RBP9.61□□□□□ -0.87
COL6A3-204ENST00000392003 PNPLA1Q8N8W4 532 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 OR7D4Q8NG98 312 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 GPR150Q8NGU9 434 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 CASD1Q96PB1 797 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 BTBD9Q96Q07 612 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 ERVK-6Q9BXR3 956 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 TAS2R13Q9NYV9 303 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 RIMKLBQ9ULI2 386 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 MRASO14807 208 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 CASQ2O14958 399 aaPredicted RBP9.6□□□□□ -0.87
COL6A3-204ENST00000392003 ADAM23O75077 832 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 FOSL1P15407 271 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 FDXRP22570 491 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 WEE1P30291 646 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 AQP4P55087 323 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 CDH4P55283 916 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 RPL26P61254 145 aaKnown RBP9.6□□□□□ -0.87
COL6A3-204ENST00000392003 CEACAM7Q14002 265 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 PRR23CQ6ZRP0 262 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 SLC38A6Q8IZM9 456 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 PCYOX1LQ8NBM8 494 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 PDZD8Q8NEN9 1154 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 TADA1Q96BN2 335 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 L3HYPDHQ96EM0 354 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 CFHR5Q9BXR6 569 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 GSTO2Q9H4Y5 243 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 POPDC3Q9HBV1 291 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 SCUBE2Q9NQ36 999 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 INTS10Q9NVR2 710 aaKnown RBP9.6□□□□□ -0.87
COL6A3-204ENST00000392003 CIDEBQ9UHD4 219 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 VPS9D1Q9Y2B5 631 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 FNDC1Q4ZHG4 1894 aaPredicted RBP9.6□□□□□ -0.87
COL6A3-204ENST00000392003 SUPT3HB4E1H0 165 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 PRRG1O14668 218 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 GIPC1O14908 333 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 MT-CO1P00395 513 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 MSL3P1P0C860 447 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 VCLP18206 1134 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 PRKACBP22694 351 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 CDH13P55290 713 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 ACVR1Q04771 509 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 RAD51Q06609 339 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 PTPRCAPQ14761 206 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 PFKFB4Q16877 469 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 CLEC6AQ6EIG7 209 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 NADSYN1Q6IA69 706 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 AFTPHQ6ULP2 937 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 GLT6D1Q7Z4J2 308 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 DDIASQ8IXT1 998 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 ALDH16A1Q8IZ83 802 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 PELI3Q8N2H9 469 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 FBXO22Q8NEZ5 403 aa9.6□□□□□ -0.87
COL6A3-204ENST00000392003 NMD3Q96D46 503 aaKnown RBP9.6□□□□□ -0.87
COL6A3-204ENST00000392003 CDKN2AIPNLQ96HQ2 116 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms