RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 GULP1Q9UBP9 304 aa8.71□□□□□ -1.01
LIG3-202ENST00000378526 USP18Q9UMW8 372 aa8.71□□□□□ -1.01
LIG3-202ENST00000378526 POMT1Q9Y6A1 747 aa8.71□□□□□ -1.01
LIG3-202ENST00000378526 SLC22A2O15244 555 aa8.71□□□□□ -1.01
LIG3-202ENST00000378526 CAP2P40123 477 aa8.71□□□□□ -1.01
LIG3-202ENST00000378526 CLK2P49760 499 aaKnown RBP8.71□□□□□ -1.01
LIG3-202ENST00000378526 GNMTQ14749 295 aa8.71□□□□□ -1.01
LIG3-202ENST00000378526 RAB35Q15286 201 aa8.71□□□□□ -1.01
LIG3-202ENST00000378526 DDB1Q16531 1140 aa8.71□□□□□ -1.01
LIG3-202ENST00000378526 CORO2AQ92828 525 aa8.71□□□□□ -1.01
LIG3-202ENST00000378526 ZNF578Q96N58 590 aaPredicted RBP8.71□□□□□ -1.01
LIG3-202ENST00000378526 HEPHQ9BQS7 1158 aa8.71□□□□□ -1.01
LIG3-202ENST00000378526 GAREM1Q9H706 876 aa8.71□□□□□ -1.01
LIG3-202ENST00000378526 PRKAG2Q9UGJ0 569 aa8.71□□□□□ -1.01
LIG3-202ENST00000378526 DLGAP4Q9Y2H0 992 aa8.71□□□□□ -1.01
LIG3-202ENST00000378526 BOLA2-SMG1P6H3BVE0 249 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 AURKAO14965 403 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 SLC16A4O15374 487 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 AVILO75366 819 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 PROZP22891 400 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 CDH17Q12864 832 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 GALEQ14376 348 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 ARHGAP11AQ6P4F7 1023 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 ISLR2Q6UXK2 745 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 NUP54Q7Z3B4 507 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 SPATA19Q7Z5L4 167 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 SLC30A8Q8IWU4 369 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 C12orf45Q8N5I9 185 aaPredicted RBP8.71□□□□□ -1.02
LIG3-202ENST00000378526 FAM98AQ8NCA5 519 aaKnown RBP8.71□□□□□ -1.02
LIG3-202ENST00000378526 SH3RF3Q8TEJ3 882 aaPredicted RBP8.71□□□□□ -1.02
LIG3-202ENST00000378526 DNAJC1Q96KC8 554 aaKnown RBP8.71□□□□□ -1.02
LIG3-202ENST00000378526 ZYG11BQ9C0D3 744 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 MMP27Q9H306 513 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 PRMT7Q9NVM4 692 aaPredicted RBP8.71□□□□□ -1.02
LIG3-202ENST00000378526 TAS2R9Q9NYW1 312 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 ZSWIM5Q9P217 1185 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 GAKO14976 1311 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 CCNB1P14635 433 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 PTPN3P26045 913 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 SNRNP35Q16560 246 aaKnown RBP8.71□□□□□ -1.02
LIG3-202ENST00000378526 CTC1Q2NKJ3 1217 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 PAOXQ6QHF9 649 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 PNLDC1Q8NA58 520 aaKnown RBP8.71□□□□□ -1.02
LIG3-202ENST00000378526 GALNT11Q8NCW6 608 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 OR10R2Q8NGX6 335 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 SNX33Q8WV41 574 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 ELMO3Q96BJ8 720 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 ERLEC1Q96DZ1 483 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 SPATA9Q9BWV2 254 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 DCSTAMPQ9H295 470 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 ZNF358Q9NW07 568 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 CMAHPQ9Y471 501 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 N6AMT1Q9Y5N5 214 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 OR6C65A6NJZ3 312 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 HDAC3O15379 428 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 CXCR2P25025 360 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 DNASE1L1P49184 302 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 HNRNPFP52597 415 aaKnown RBP8.71□□□□□ -1.02
LIG3-202ENST00000378526 S100A10P60903 97 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 PTPN11Q06124 597 aaPredicted RBP8.71□□□□□ -1.02
LIG3-202ENST00000378526 NAPRTQ6XQN6 538 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 OR7G1Q8NGA0 311 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 SCRN2Q96FV2 425 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 FAIM2Q9BWQ8 316 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 PNMA3Q9UL41 463 aa8.71□□□□□ -1.02
LIG3-202ENST00000378526 DLGAP1O14490 977 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 XKRYO14609 159 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 SLC28A2O43868 658 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 VARSP26640 1264 aaKnown RBP8.7□□□□□ -1.02
LIG3-202ENST00000378526 PCSK1P29120 753 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 DCDC5Q6ZRR9 648 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 JAZF1Q86VZ6 243 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 SPARTQ8N0X7 666 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 ARL14Q8N4G2 192 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 PCDH20Q8N6Y1 951 aaKnown RBP8.7□□□□□ -1.02
LIG3-202ENST00000378526 PACRGLQ8N7B6 248 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 SMARCD1Q96GM5 515 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 SAMD11Q96NU1 681 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 FUZQ9BT04 418 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 CNPPD1Q9BV87 410 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 CEP41Q9BYV8 373 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 WDCPQ9H6R7 721 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 SLC38A7Q9NVC3 462 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 NDUFB9Q9Y6M9 179 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 PRAG1Q86YV5 1406 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 HACD1B0YJ81 288 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 EIF1AYO14602 144 aaKnown RBP8.7□□□□□ -1.02
LIG3-202ENST00000378526 OXSR1O95747 527 aaPredicted RBP8.7□□□□□ -1.02
LIG3-202ENST00000378526 F9P00740 461 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 GKN3PP0CG01 181 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 EIF1AXP47813 144 aaKnown RBP8.7□□□□□ -1.02
LIG3-202ENST00000378526 STXBP1P61764 594 aaKnown RBP8.7□□□□□ -1.02
LIG3-202ENST00000378526 TMEM132DQ14C87 1099 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 TMEM41BQ5BJD5 291 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 TMC8Q8IU68 726 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 ZNF808Q8N4W9 903 aaPredicted RBP8.7□□□□□ -1.02
LIG3-202ENST00000378526 CNTD1Q8N815 330 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 ZFP3Q96NJ6 502 aa8.7□□□□□ -1.02
LIG3-202ENST00000378526 MKRN2Q9H000 416 aaKnown RBP8.7□□□□□ -1.02
LIG3-202ENST00000378526 BLOC1S4Q9NUP1 217 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms