RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 SPAM1P38567 509 aa13.7□□□□□ -0.22
PTPRF-202ENST00000372405 PTGER3P43115 390 aa13.7□□□□□ -0.22
PTPRF-202ENST00000372405 NAGLUP54802 743 aa13.7□□□□□ -0.22
PTPRF-202ENST00000372405 CCDC15Q0P6D6 951 aa13.7□□□□□ -0.22
PTPRF-202ENST00000372405 ATAT1Q5SQI0 421 aa13.7□□□□□ -0.22
PTPRF-202ENST00000372405 GRAMD4Q6IC98 578 aa13.7□□□□□ -0.22
PTPRF-202ENST00000372405 BRAT1Q6PJG6 821 aa13.7□□□□□ -0.22
PTPRF-202ENST00000372405 PARM1Q6UWI2 310 aa13.7□□□□□ -0.22
PTPRF-202ENST00000372405 MAVSQ7Z434 540 aa13.7□□□□□ -0.22
PTPRF-202ENST00000372405 SNX20Q7Z614 316 aa13.7□□□□□ -0.22
PTPRF-202ENST00000372405 SERPINA9Q86WD7 417 aa13.7□□□□□ -0.22
PTPRF-202ENST00000372405 PIWIL2Q8TC59 973 aaKnown RBP13.7□□□□□ -0.22
PTPRF-202ENST00000372405 RPP25Q9BUL9 199 aaKnown RBP13.7□□□□□ -0.22
PTPRF-202ENST00000372405 ALG9Q9H6U8 611 aa13.7□□□□□ -0.22
PTPRF-202ENST00000372405 ASB8Q9H765 288 aa13.7□□□□□ -0.22
PTPRF-202ENST00000372405 TAS2R13Q9NYV9 303 aa13.7□□□□□ -0.22
PTPRF-202ENST00000372405 IL36AQ9UHA7 158 aa13.7□□□□□ -0.22
PTPRF-202ENST00000372405 SLC12A4Q9UP95 1085 aa13.7□□□□□ -0.22
PTPRF-202ENST00000372405 AGAP14A8MT82 685 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 IQCF5A8MTL0 148 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 TMEM114B3SHH9 223 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 ZNF195O14628 629 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 HLA-EP13747 358 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 TIMP2P16035 220 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 GJA4P35212 333 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 KPNA2P52292 529 aaKnown RBP13.69□□□□□ -0.22
PTPRF-202ENST00000372405 METAP1P53582 386 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 AQP5P55064 265 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 PDAP1Q13442 181 aaKnown RBP13.69□□□□□ -0.22
PTPRF-202ENST00000372405 RUNX3Q13761 415 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 CTC1Q2NKJ3 1217 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 POM121L1PQ3SYA9 428 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 KLC3Q6P597 504 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 LSMEM2Q8N112 164 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 ERP27Q96DN0 273 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 PRR11Q96HE9 360 aaPredicted RBP13.69□□□□□ -0.22
PTPRF-202ENST00000372405 CCDC68Q9H2F9 335 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 KCNK4Q9NYG8 393 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 APPL1Q9UKG1 709 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 SARDHQ9UL12 918 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 HCN2Q9UL51 889 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 PLXNA2O75051 1894 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 A0A1W2PQ67 120 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 A8MT66 165 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 H2AFYO75367 372 aaKnown RBP13.69□□□□□ -0.22
PTPRF-202ENST00000372405 TSPAN12O95859 305 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 ESR1P03372 595 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 RBP1P09455 135 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 LAMP2P13473 410 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 CD9P21926 228 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 ATP5F1P24539 256 aaPredicted RBP13.69□□□□□ -0.22
PTPRF-202ENST00000372405 LTBRP36941 435 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 SCTRP47872 440 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 POLR2LP62875 67 aaKnown RBP13.69□□□□□ -0.22
PTPRF-202ENST00000372405 OR4D1Q15615 310 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 CERS6Q6ZMG9 384 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 MTDHQ86UE4 582 aaKnown RBP13.69□□□□□ -0.22
PTPRF-202ENST00000372405 ZNF781Q8N8C0 355 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 TERB1Q8NA31 727 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 SIDT2Q8NBJ9 832 aaKnown RBP13.69□□□□□ -0.22
PTPRF-202ENST00000372405 CD200R1Q8TD46 325 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 SKA1Q96BD8 255 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 LRRC37BQ96QE4 947 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 EBF4Q9BQW3 602 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 DRC3Q9H069 523 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 ZNF576Q9H609 170 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 PCDH12Q9NPG4 1184 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 HEY2Q9UBP5 337 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 PLA2G4CQ9UP65 541 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 PRSS21Q9Y6M0 314 aa13.69□□□□□ -0.22
PTPRF-202ENST00000372405 LRRK1Q38SD2 2015 aa13.68□□□□□ -0.22
PTPRF-202ENST00000372405 ANKRD12Q6UB98 2062 aa13.68□□□□□ -0.22
PTPRF-202ENST00000372405 PRMT5O14744 637 aaPredicted RBP13.68□□□□□ -0.22
PTPRF-202ENST00000372405 DCTN3O75935 186 aa13.68□□□□□ -0.22
PTPRF-202ENST00000372405 PSMC3P17980 439 aa13.68□□□□□ -0.22
PTPRF-202ENST00000372405 ITGALP20701 1170 aa13.68□□□□□ -0.22
PTPRF-202ENST00000372405 ACRV1P26436 265 aa13.68□□□□□ -0.22
PTPRF-202ENST00000372405 SERPINB3P29508 390 aa13.68□□□□□ -0.22
PTPRF-202ENST00000372405 SPINT3P49223 89 aa13.68□□□□□ -0.22
PTPRF-202ENST00000372405 CLCN7P51798 805 aa13.68□□□□□ -0.22
PTPRF-202ENST00000372405 DNAJB13P59910 316 aa13.68□□□□□ -0.22
PTPRF-202ENST00000372405 BNIP1Q12981 228 aa13.68□□□□□ -0.22
PTPRF-202ENST00000372405 ZNF805Q5CZA5 627 aa13.68□□□□□ -0.22
PTPRF-202ENST00000372405 C9orf64Q5T6V5 341 aa13.68□□□□□ -0.22
PTPRF-202ENST00000372405 ALYREFQ86V81 257 aaKnown RBP13.68□□□□□ -0.22
PTPRF-202ENST00000372405 STK40Q8N2I9 435 aa13.68□□□□□ -0.22
PTPRF-202ENST00000372405 KCNJ9Q92806 393 aa13.68□□□□□ -0.22
PTPRF-202ENST00000372405 PBXIP1Q96AQ6 731 aa13.68□□□□□ -0.22
PTPRF-202ENST00000372405 TMEM237Q96Q45 408 aa13.68□□□□□ -0.22
PTPRF-202ENST00000372405 POMKQ9H5K3 350 aa13.68□□□□□ -0.22
PTPRF-202ENST00000372405 ZDHHC4Q9NPG8 344 aa13.68□□□□□ -0.22
PTPRF-202ENST00000372405 SLC8A2Q9UPR5 921 aa13.68□□□□□ -0.22
PTPRF-202ENST00000372405 UPK3BL1B0FP48 263 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 UPK3BL2E5RIL1 263 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 ARNTLO00327 626 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 PFDN6O15212 129 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 VPS26AO75436 327 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 HSPA4LO95757 839 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 ALOX15P16050 662 aaPredicted RBP13.67□□□□□ -0.22
PTPRF-202ENST00000372405 PRKAA2P54646 552 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms