RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 OR51F1A6NGY5 319 aa22■■□□□ 1.11
SHMT1-203ENST00000354098 H7C0S8 307 aa22■■□□□ 1.11
SHMT1-203ENST00000354098 CACNB4O00305 520 aaPredicted RBP22■■□□□ 1.11
SHMT1-203ENST00000354098 TOR1BO14657 336 aa22■■□□□ 1.11
SHMT1-203ENST00000354098 MAGEC1O60732 1142 aa22■■□□□ 1.11
SHMT1-203ENST00000354098 LRP3O75074 770 aa22■■□□□ 1.11
SHMT1-203ENST00000354098 SRP72O76094 671 aaKnown RBP22■■□□□ 1.11
SHMT1-203ENST00000354098 PYGLP06737 847 aa22■■□□□ 1.11
SHMT1-203ENST00000354098 RHOXF2BP0C7M4 288 aa22■■□□□ 1.11
SHMT1-203ENST00000354098 MYCLP1P12525 358 aaPredicted RBP22■■□□□ 1.11
SHMT1-203ENST00000354098 MC4RP32245 332 aa22■■□□□ 1.11
SHMT1-203ENST00000354098 ACVR1Q04771 509 aa22■■□□□ 1.11
SHMT1-203ENST00000354098 NFATC4Q14934 902 aa22■■□□□ 1.11
SHMT1-203ENST00000354098 ZNF542PQ5EBM4 170 aa22■■□□□ 1.11
SHMT1-203ENST00000354098 IGDCC3Q8IVU1 814 aa22■■□□□ 1.11
SHMT1-203ENST00000354098 PDIK1LQ8N165 341 aa22■■□□□ 1.11
SHMT1-203ENST00000354098 FBXO25Q8TCJ0 367 aa22■■□□□ 1.11
SHMT1-203ENST00000354098 ZNF398Q8TD17 642 aa22■■□□□ 1.11
SHMT1-203ENST00000354098 DTX3LQ8TDB6 740 aa22■■□□□ 1.11
SHMT1-203ENST00000354098 HDAC10Q969S8 669 aa22■■□□□ 1.11
SHMT1-203ENST00000354098 RHOXF2Q9BQY4 288 aa22■■□□□ 1.11
SHMT1-203ENST00000354098 FRMD8Q9BZ67 464 aaPredicted RBP22■■□□□ 1.11
SHMT1-203ENST00000354098 FAM96AQ9H5X1 160 aa22■■□□□ 1.11
SHMT1-203ENST00000354098 MRM3Q9HC36 420 aaKnown RBP22■■□□□ 1.11
SHMT1-203ENST00000354098 PHPT1Q9NRX4 125 aaPredicted RBP22■■□□□ 1.11
SHMT1-203ENST00000354098 APPL1Q9UKG1 709 aa22■■□□□ 1.11
SHMT1-203ENST00000354098 RIMKLBQ9ULI2 386 aa22■■□□□ 1.11
SHMT1-203ENST00000354098 PCDH15Q96QU1 1955 aa22■■□□□ 1.11
SHMT1-203ENST00000354098 CCDC162PA2VCL2 907 aa21.99■■□□□ 1.11
SHMT1-203ENST00000354098 NDC80O14777 642 aa21.99■■□□□ 1.11
SHMT1-203ENST00000354098 HOXC4P09017 264 aaPredicted RBP21.99■■□□□ 1.11
SHMT1-203ENST00000354098 PRSS56P0CW18 603 aa21.99■■□□□ 1.11
SHMT1-203ENST00000354098 ARL4CP56559 192 aa21.99■■□□□ 1.11
SHMT1-203ENST00000354098 KIAA1024LP59773 190 aa21.99■■□□□ 1.11
SHMT1-203ENST00000354098 HIF1AQ16665 826 aa21.99■■□□□ 1.11
SHMT1-203ENST00000354098 HLA-BQ31612 363 aa21.99■■□□□ 1.11
SHMT1-203ENST00000354098 ZNF648Q5T619 568 aaPredicted RBP21.99■■□□□ 1.11
SHMT1-203ENST00000354098 ENPP7Q6UWV6 458 aa21.99■■□□□ 1.11
SHMT1-203ENST00000354098 DCP2Q8IU60 420 aaKnown RBP21.99■■□□□ 1.11
SHMT1-203ENST00000354098 PTCD2Q8WV60 388 aaKnown RBP21.99■■□□□ 1.11
SHMT1-203ENST00000354098 BTN2A2Q8WVV5 523 aa21.99■■□□□ 1.11
SHMT1-203ENST00000354098 GLYATL1Q969I3 302 aa21.99■■□□□ 1.11
SHMT1-203ENST00000354098 COX14Q96I36 57 aa21.99■■□□□ 1.11
SHMT1-203ENST00000354098 FCRL3Q96P31 734 aaPredicted RBP21.99■■□□□ 1.11
SHMT1-203ENST00000354098 GTPBP2Q9BX10 602 aaKnown RBP21.99■■□□□ 1.11
SHMT1-203ENST00000354098 ASB8Q9H765 288 aa21.99■■□□□ 1.11
SHMT1-203ENST00000354098 IL21RQ9HBE5 538 aa21.99■■□□□ 1.11
SHMT1-203ENST00000354098 GDF3Q9NR23 364 aa21.99■■□□□ 1.11
SHMT1-203ENST00000354098 SAMD15Q9P1V8 674 aa21.99■■□□□ 1.11
SHMT1-203ENST00000354098 TMEM98Q9Y2Y6 226 aa21.99■■□□□ 1.11
SHMT1-203ENST00000354098 OAS3Q9Y6K5 1087 aaKnown RBP21.99■■□□□ 1.11
SHMT1-203ENST00000354098 ADAMTS9Q9P2N4 1935 aa21.99■■□□□ 1.11
SHMT1-203ENST00000354098 RALGAPA1Q6GYQ0 2036 aa21.98■■□□□ 1.11
SHMT1-203ENST00000354098 GFRA3O60609 400 aa21.98■■□□□ 1.11
SHMT1-203ENST00000354098 POLD2P49005 469 aa21.98■■□□□ 1.11
SHMT1-203ENST00000354098 CDKN1CP49918 316 aaPredicted RBP21.98■■□□□ 1.11
SHMT1-203ENST00000354098 EIF2B5Q13144 721 aaKnown RBP21.98■■□□□ 1.11
SHMT1-203ENST00000354098 PDPK2PQ6A1A2 396 aa21.98■■□□□ 1.11
SHMT1-203ENST00000354098 MACC1Q6ZN28 852 aa21.98■■□□□ 1.11
SHMT1-203ENST00000354098 WDR83Q9BRX9 315 aaKnown RBP21.98■■□□□ 1.11
SHMT1-203ENST00000354098 MRPL40Q9NQ50 206 aaKnown RBP21.98■■□□□ 1.11
SHMT1-203ENST00000354098 KLF15Q9UIH9 416 aa21.98■■□□□ 1.11
SHMT1-203ENST00000354098 ZNF106Q9H2Y7 1883 aaKnown RBP21.98■■□□□ 1.11
SHMT1-203ENST00000354098 EP300Q09472 2414 aaPredicted RBP21.98■■□□□ 1.11
SHMT1-203ENST00000354098 MAGEB16A2A368 324 aa21.98■■□□□ 1.11
SHMT1-203ENST00000354098 MTX2O75431 263 aa21.98■■□□□ 1.11
SHMT1-203ENST00000354098 SLC25A14O95258 325 aaPredicted RBP21.98■■□□□ 1.11
SHMT1-203ENST00000354098 SYPP08247 313 aa21.98■■□□□ 1.11
SHMT1-203ENST00000354098 HTR1BP28222 390 aa21.98■■□□□ 1.11
SHMT1-203ENST00000354098 NFATC2Q13469 925 aa21.98■■□□□ 1.11
SHMT1-203ENST00000354098 PTK2BQ14289 1009 aa21.98■■□□□ 1.11
SHMT1-203ENST00000354098 DNAJC21Q5F1R6 531 aaKnown RBP21.98■■□□□ 1.11
SHMT1-203ENST00000354098 DOK6Q6PKX4 331 aa21.98■■□□□ 1.11
SHMT1-203ENST00000354098 PRR23CQ6ZRP0 262 aa21.98■■□□□ 1.11
SHMT1-203ENST00000354098 PNPLA1Q8N8W4 532 aa21.98■■□□□ 1.11
SHMT1-203ENST00000354098 PEX13Q92968 403 aa21.98■■□□□ 1.11
SHMT1-203ENST00000354098 TSACCQ96A04 125 aaPredicted RBP21.98■■□□□ 1.11
SHMT1-203ENST00000354098 STAMBPL1Q96FJ0 436 aa21.98■■□□□ 1.11
SHMT1-203ENST00000354098 WDR92Q96MX6 357 aa21.98■■□□□ 1.11
SHMT1-203ENST00000354098 VPS35Q96QK1 796 aa21.98■■□□□ 1.11
SHMT1-203ENST00000354098 GAREM1Q9H706 876 aa21.98■■□□□ 1.11
SHMT1-203ENST00000354098 FGF22Q9HCT0 170 aa21.98■■□□□ 1.11
SHMT1-203ENST00000354098 ZDHHC18Q9NUE0 388 aa21.98■■□□□ 1.11
SHMT1-203ENST00000354098 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.98■■□□□ 1.11
SHMT1-203ENST00000354098 CACNA1EQ15878 2313 aa21.97■■□□□ 1.11
SHMT1-203ENST00000354098 KNL1Q8NG31 2342 aa21.97■■□□□ 1.11
SHMT1-203ENST00000354098 FAM237BA0A1B0GVD1 139 aa21.97■■□□□ 1.11
SHMT1-203ENST00000354098 GOT2P00505 430 aaKnown RBP21.97■■□□□ 1.11
SHMT1-203ENST00000354098 FUCA1P04066 466 aa21.97■■□□□ 1.11
SHMT1-203ENST00000354098 ELK3P41970 407 aa21.97■■□□□ 1.11
SHMT1-203ENST00000354098 CAV1Q03135 178 aa21.97■■□□□ 1.11
SHMT1-203ENST00000354098 PDIA2Q13087 525 aaKnown RBP21.97■■□□□ 1.11
SHMT1-203ENST00000354098 ITGA9Q13797 1035 aa21.97■■□□□ 1.11
SHMT1-203ENST00000354098 SMAD1Q15797 465 aaKnown RBP21.97■■□□□ 1.11
SHMT1-203ENST00000354098 KHDC1Q4VXA5 237 aaKnown RBP21.97■■□□□ 1.11
SHMT1-203ENST00000354098 ZRANB3Q5FWF4 1079 aa21.97■■□□□ 1.11
SHMT1-203ENST00000354098 TEX35Q5T0J7 233 aa21.97■■□□□ 1.11
SHMT1-203ENST00000354098 TMEM135Q86UB9 458 aa21.97■■□□□ 1.11
SHMT1-203ENST00000354098 OR56A4Q8NGH8 313 aa21.97■■□□□ 1.11
SHMT1-203ENST00000354098 OR6P1Q8NGX9 317 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms