RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 APOOQ9BUR5 198 aa22.02■■□□□ 1.12
SDC3-202ENST00000339394 LGR4Q9BXB1 951 aa22.02■■□□□ 1.12
SDC3-202ENST00000339394 TEX101Q9BY14 249 aa22.02■■□□□ 1.12
SDC3-202ENST00000339394 IL1RAPL1Q9NZN1 696 aa22.02■■□□□ 1.12
SDC3-202ENST00000339394 TMPRSS11EQ9UL52 423 aa22.02■■□□□ 1.12
SDC3-202ENST00000339394 HCN4Q9Y3Q4 1203 aa22.02■■□□□ 1.12
SDC3-202ENST00000339394 A0A1W2PR77 199 aa22.01■■□□□ 1.11
SDC3-202ENST00000339394 INPP4BO15327 924 aa22.01■■□□□ 1.11
SDC3-202ENST00000339394 WNT1P04628 370 aa22.01■■□□□ 1.11
SDC3-202ENST00000339394 FAM153BP0C7A2 387 aa22.01■■□□□ 1.11
SDC3-202ENST00000339394 PRSS56P0CW18 603 aa22.01■■□□□ 1.11
SDC3-202ENST00000339394 CA5AP35218 305 aa22.01■■□□□ 1.11
SDC3-202ENST00000339394 CDK3Q00526 305 aa22.01■■□□□ 1.11
SDC3-202ENST00000339394 FAM153CQ494X1 144 aa22.01■■□□□ 1.11
SDC3-202ENST00000339394 ZRANB3Q5FWF4 1079 aa22.01■■□□□ 1.11
SDC3-202ENST00000339394 SPANXN3Q5MJ09 141 aa22.01■■□□□ 1.11
SDC3-202ENST00000339394 STEAP4Q687X5 459 aa22.01■■□□□ 1.11
SDC3-202ENST00000339394 AFTPHQ6ULP2 937 aa22.01■■□□□ 1.11
SDC3-202ENST00000339394 PTAR1Q7Z6K3 402 aaPredicted RBP22.01■■□□□ 1.11
SDC3-202ENST00000339394 PALM2Q8IXS6 379 aa22.01■■□□□ 1.11
SDC3-202ENST00000339394 SUMF1Q8NBK3 374 aa22.01■■□□□ 1.11
SDC3-202ENST00000339394 SERBP1Q8NC51 408 aaKnown RBP eCLIP22.01■■□□□ 1.11
SDC3-202ENST00000339394 OR13H1Q8NG92 308 aa22.01■■□□□ 1.11
SDC3-202ENST00000339394 FAM174AQ8TBP5 190 aa22.01■■□□□ 1.11
SDC3-202ENST00000339394 BTN2A2Q8WVV5 523 aa22.01■■□□□ 1.11
SDC3-202ENST00000339394 FUBP1Q96AE4 644 aaKnown RBP22.01■■□□□ 1.11
SDC3-202ENST00000339394 SGSM3Q96HU1 749 aa22.01■■□□□ 1.11
SDC3-202ENST00000339394 PARD6BQ9BYG5 372 aa22.01■■□□□ 1.11
SDC3-202ENST00000339394 FAM96AQ9H5X1 160 aa22.01■■□□□ 1.11
SDC3-202ENST00000339394 SUSD2Q9UGT4 822 aa22.01■■□□□ 1.11
SDC3-202ENST00000339394 MYLKQ15746 1914 aa22■■□□□ 1.11
SDC3-202ENST00000339394 LRRK1Q38SD2 2015 aa22■■□□□ 1.11
SDC3-202ENST00000339394 A0A1B0GTW7 788 aa22■■□□□ 1.11
SDC3-202ENST00000339394 AGAP14A8MT82 685 aa22■■□□□ 1.11
SDC3-202ENST00000339394 GOLGA8KD6RF30 607 aa22■■□□□ 1.11
SDC3-202ENST00000339394 GOLGA8TH3BQL2 631 aa22■■□□□ 1.11
SDC3-202ENST00000339394 ITGALP20701 1170 aa22■■□□□ 1.11
SDC3-202ENST00000339394 FOXN2P32314 431 aa22■■□□□ 1.11
SDC3-202ENST00000339394 HOXD12P35452 270 aa22■■□□□ 1.11
SDC3-202ENST00000339394 NBL1P41271 181 aa22■■□□□ 1.11
SDC3-202ENST00000339394 RABIFP47224 123 aa22■■□□□ 1.11
SDC3-202ENST00000339394 CSNK1EP49674 416 aaKnown RBP22■■□□□ 1.11
SDC3-202ENST00000339394 CDKN1CP49918 316 aaPredicted RBP22■■□□□ 1.11
SDC3-202ENST00000339394 YPEL5P62699 121 aa22■■□□□ 1.11
SDC3-202ENST00000339394 SMAD1Q15797 465 aaKnown RBP22■■□□□ 1.11
SDC3-202ENST00000339394 IQCHQ86VS3 1027 aa22■■□□□ 1.11
SDC3-202ENST00000339394 RELL1Q8IUW5 271 aa22■■□□□ 1.11
SDC3-202ENST00000339394 PIANPQ8IYJ0 282 aa22■■□□□ 1.11
SDC3-202ENST00000339394 UNC5BQ8IZJ1 945 aa22■■□□□ 1.11
SDC3-202ENST00000339394 GLYATL1Q969I3 302 aa22■■□□□ 1.11
SDC3-202ENST00000339394 KLHDC7BQ96G42 594 aa22■■□□□ 1.11
SDC3-202ENST00000339394 HIC2Q96JB3 615 aa22■■□□□ 1.11
SDC3-202ENST00000339394 VPS35Q96QK1 796 aa22■■□□□ 1.11
SDC3-202ENST00000339394 DOCK9Q9BZ29 2069 aa22■■□□□ 1.11
SDC3-202ENST00000339394 THADAQ6YHU6 1953 aa22■■□□□ 1.11
SDC3-202ENST00000339394 MUC6Q6W4X9 2439 aa22■■□□□ 1.11
SDC3-202ENST00000339394 LAMA1P25391 3075 aa22■■□□□ 1.11
SDC3-202ENST00000339394 PRR5-ARHGAP8B1AHC4 643 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 TOR1BO14657 336 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 EPN2O95208 641 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 THEGLP0DJG4 465 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 DPP6P42658 865 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 CACNG1Q06432 222 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 OVGP1Q12889 678 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 LONRF1Q17RB8 773 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 GPR33Q49SQ1 333 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 LAIR1Q6GTX8 287 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 PSAPL1Q6NUJ1 521 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 SLC22A18ASQ8N1D0 253 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP21.99■■□□□ 1.111e-6■■■■■ 60.7
SDC3-202ENST00000339394 COX14Q96I36 57 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 LRRC4CQ9HCJ2 640 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 C20orf96Q9NUD7 363 aaPredicted RBP21.99■■□□□ 1.11
SDC3-202ENST00000339394 SMOXQ9NWM0 555 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.99■■□□□ 1.11
SDC3-202ENST00000339394 SLC25A14O95258 325 aaPredicted RBP21.99■■□□□ 1.11
SDC3-202ENST00000339394 HOXC4P09017 264 aaPredicted RBP21.99■■□□□ 1.11
SDC3-202ENST00000339394 SSTR1P30872 391 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 PDE1CQ14123 709 aaPredicted RBP21.99■■□□□ 1.11
SDC3-202ENST00000339394 SLMAPQ14BN4 828 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 FASTKD1Q53R41 847 aaKnown RBP21.99■■□□□ 1.11
SDC3-202ENST00000339394 TPRG1LQ5T0D9 272 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 CAPN12Q6ZSI9 719 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 C3orf62Q6ZUJ4 267 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 TRIM74Q86UV6 250 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 PNPLA1Q8N8W4 532 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 ARRDC1-AS1Q9H2J1 176 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 ARFGAP3Q9NP61 516 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 PHPT1Q9NRX4 125 aaPredicted RBP21.99■■□□□ 1.11
SDC3-202ENST00000339394 GPR27Q9NS67 375 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 CRLS1Q9UJA2 301 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 PCDHGA5Q9Y5G8 931 aa21.99■■□□□ 1.11
SDC3-202ENST00000339394 TRBV5-4A0A0C4DH59 114 aa21.98■■□□□ 1.11
SDC3-202ENST00000339394 TLR4O00206 839 aa21.98■■□□□ 1.11
SDC3-202ENST00000339394 CACNB4O00305 520 aaPredicted RBP21.98■■□□□ 1.11
SDC3-202ENST00000339394 VILLO15195 856 aa21.98■■□□□ 1.11
SDC3-202ENST00000339394 CD3EAPO15446 510 aaKnown RBP21.98■■□□□ 1.11
SDC3-202ENST00000339394 MYCLP1P12525 358 aaPredicted RBP21.98■■□□□ 1.11
SDC3-202ENST00000339394 MCM3P25205 808 aa21.98■■□□□ 1.11
SDC3-202ENST00000339394 GPX6P59796 221 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms