RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 ZNF540Q8NDQ6 660 aa14.67□□□□□ -0.06
TCOF1-201ENST00000323668 MRPS31Q92665 395 aaKnown RBP14.67□□□□□ -0.06
TCOF1-201ENST00000323668 LRRC58Q96CX6 371 aa14.67□□□□□ -0.06
TCOF1-201ENST00000323668 OTUB1Q96FW1 271 aaPredicted RBP14.67□□□□□ -0.06
TCOF1-201ENST00000323668 TRIM45Q9H8W5 580 aaPredicted RBP14.67□□□□□ -0.06
TCOF1-201ENST00000323668 SNX6Q9UNH7 406 aa14.67□□□□□ -0.06
TCOF1-201ENST00000323668 A8MX80 341 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 SEC24AO95486 1093 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 PABPC1LQ4VXU2 614 aaKnown RBP14.66□□□□□ -0.06
TCOF1-201ENST00000323668 NOMO2Q5JPE7 1267 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 HECTD3Q5T447 861 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 DEPDC1Q5TB30 811 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 CRTC3Q6UUV7 619 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 GPR180Q86V85 440 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 DENND1CQ8IV53 801 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 ATAD1Q8NBU5 361 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 MAPK15Q8TD08 544 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 EMILIN2Q9BXX0 1053 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 RPS6KA6Q9UK32 745 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 SH3GLB1Q9Y371 365 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 DDX60LQ5H9U9 1706 aaKnown RBP14.66□□□□□ -0.06
TCOF1-201ENST00000323668 TP73O15350 636 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 DENRO43583 198 aaKnown RBP14.66□□□□□ -0.06
TCOF1-201ENST00000323668 TULP3O75386 442 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 RNASEH2AO75792 299 aaKnown RBP14.66□□□□□ -0.06
TCOF1-201ENST00000323668 KRT20P35900 424 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 DNAJB13P59910 316 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 LSAMPQ13449 338 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 ZNF846Q147U1 533 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 FAM110CQ1W6H9 321 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 INO80DQ53TQ3 878 aaPredicted RBP14.66□□□□□ -0.06
TCOF1-201ENST00000323668 NAPRTQ6XQN6 538 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 S100ZQ8WXG8 99 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 SLC47A1Q96FL8 570 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 COX4I2Q96KJ9 171 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 HBEGFQ99075 208 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 NUSAP1Q9BXS6 441 aaKnown RBP14.66□□□□□ -0.06
TCOF1-201ENST00000323668 TFB2MQ9H5Q4 396 aaKnown RBP14.66□□□□□ -0.06
TCOF1-201ENST00000323668 PREBQ9HCU5 417 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.66□□□□□ -0.06
TCOF1-201ENST00000323668 OR4F21O95013 312 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 SLC35E2BP0CK96 405 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 OGNP20774 298 aaKnown RBP14.66□□□□□ -0.06
TCOF1-201ENST00000323668 CHI3L1P36222 383 aaPredicted RBP14.66□□□□□ -0.06
TCOF1-201ENST00000323668 NRG1Q02297 640 aaPredicted RBP14.66□□□□□ -0.06
TCOF1-201ENST00000323668 IL10RBQ08334 325 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 HSPA14Q0VDF9 509 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 ERMP1Q7Z2K6 904 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 IFNLR1Q8IU57 520 aaPredicted RBP14.66□□□□□ -0.06
TCOF1-201ENST00000323668 TRPV3Q8NET8 790 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 MZB1Q8WU39 189 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 TM6SF2Q9BZW4 377 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 MFSD1Q9H3U5 465 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 GNPDA1P46926 289 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 TUBA4AP68366 448 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 PRKCQQ04759 706 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.66□□□□□ -0.06
TCOF1-201ENST00000323668 RPS27LQ71UM5 84 aaKnown RBP14.66□□□□□ -0.06
TCOF1-201ENST00000323668 CTU1Q7Z7A3 348 aaKnown RBP14.66□□□□□ -0.06
TCOF1-201ENST00000323668 ESAMQ96AP7 390 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.66□□□□□ -0.06
TCOF1-201ENST00000323668 FANCEQ9HB96 536 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 DUSP12Q9UNI6 340 aa14.66□□□□□ -0.06
TCOF1-201ENST00000323668 KIAA1551Q9HCM1 1747 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 AHDC1Q5TGY3 1603 aaPredicted RBP14.65□□□□□ -0.06
TCOF1-201ENST00000323668 SCN7AQ01118 1682 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 CCDC162PA2VCL2 907 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 IQCF3P0C7M6 154 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 MTHFD1P11586 935 aaKnown RBP14.65□□□□□ -0.06
TCOF1-201ENST00000323668 IRF8Q02556 426 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 FAM117BQ6P1L5 589 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 EMID1Q96A84 441 aaPredicted RBP14.65□□□□□ -0.06
TCOF1-201ENST00000323668 PRDM5Q9NQX1 630 aaPredicted RBP14.65□□□□□ -0.06
TCOF1-201ENST00000323668 MOSPD1Q9UJG1 213 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 PADI3Q9ULW8 664 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 KCNH4Q9UQ05 1017 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 PNMA8CA0A1B0GUJ8 204 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 NADKO95544 446 aaPredicted RBP14.65□□□□□ -0.06
TCOF1-201ENST00000323668 ABCB1P08183 1280 aaPredicted RBP14.65□□□□□ -0.06
TCOF1-201ENST00000323668 COX7A2P14406 83 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 SLC10A7Q0GE19 358 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 SPANXN2Q5MJ10 180 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 OLIG1Q8TAK6 271 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 CENPIQ92674 756 aaPredicted RBP14.65□□□□□ -0.06
TCOF1-201ENST00000323668 SORT1Q99523 831 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 FBRSL1Q9HCM7 1045 aaKnown RBP14.65□□□□□ -0.06
TCOF1-201ENST00000323668 ACTR3BQ9P1U1 418 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 LINC00854A0A1B0GVQ3 168 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 ARPC2O15144 300 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 SERPIND1P05546 499 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 HOXB6P17509 224 aaKnown RBP14.65□□□□□ -0.06
TCOF1-201ENST00000323668 IDH2P48735 452 aaKnown RBP14.65□□□□□ -0.06
TCOF1-201ENST00000323668 CDK9P50750 372 aaKnown RBP14.65□□□□□ -0.06
TCOF1-201ENST00000323668 ST8SIA6P61647 398 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 SPIDRQ14159 915 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 AMER2Q8N7J2 671 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 C2CD4AQ8NCU7 369 aaPredicted RBP14.65□□□□□ -0.06
TCOF1-201ENST00000323668 ZNF778Q96MU6 729 aa14.65□□□□□ -0.06
TCOF1-201ENST00000323668 RBM4BQ9BQ04 359 aaKnown RBP14.65□□□□□ -0.06
TCOF1-201ENST00000323668 C2orf49Q9BVC5 232 aaPredicted RBP14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms