RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 MPP5Q8N3R9 675 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 POF1BQ8WVV4 589 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 IPCEF1Q8WWN9 437 aaPredicted RBP13.82□□□□□ -0.2
CSPG4-201ENST00000308508 SLC22A1O15245 554 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 UROSP10746 265 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 PEPDP12955 493 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 KLF10Q13118 480 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 FBXO16Q8IX29 292 aaPredicted RBP13.82□□□□□ -0.2
CSPG4-201ENST00000308508 ZNF34Q8IZ26 560 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 PCSK9Q8NBP7 692 aaKnown RBP13.82□□□□□ -0.2
CSPG4-201ENST00000308508 OR5T3Q8NGG3 340 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 TOR3AQ9H497 397 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 KAT8Q9H7Z6 458 aaKnown RBP13.82□□□□□ -0.2
CSPG4-201ENST00000308508 SALL1Q9NSC2 1324 aa13.82□□□□□ -0.2
CSPG4-201ENST00000308508 HOXC6P09630 235 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 LARS2Q15031 903 aaKnown RBP13.81□□□□□ -0.2
CSPG4-201ENST00000308508 OR4L1Q8NH43 312 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 KCNS3Q9BQ31 491 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 ZYG11BQ9C0D3 744 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 ZNF286BP0CG31 522 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 PCSK2P16519 638 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 LPOP22079 712 aaPredicted RBP13.81□□□□□ -0.2
CSPG4-201ENST00000308508 MFSD5Q6N075 450 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 PRELID2Q8N945 189 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 SPERTQ8NA61 448 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 IL1RAPQ9NPH3 570 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 RCOR3Q9P2K3 495 aaPredicted RBP13.81□□□□□ -0.2
CSPG4-201ENST00000308508 CDH8P55286 799 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 RIPPLY1Q0D2K3 151 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 CBR4Q8N4T8 237 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 DCDC2CA8MYV0 355 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 ALOX15BO15296 676 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 MYBL2P10244 700 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 ARCN1P48444 511 aaKnown RBP13.81□□□□□ -0.2
CSPG4-201ENST00000308508 METTL21CQ5VZV1 264 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 USP30Q70CQ3 517 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 CLP1Q92989 425 aaKnown RBP13.81□□□□□ -0.2
CSPG4-201ENST00000308508 ROPN1LQ96C74 230 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 CHIAQ9BZP6 476 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 ZNF350Q9GZX5 532 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 RC3H2Q9HBD1 1191 aaKnown RBP13.81□□□□□ -0.2
CSPG4-201ENST00000308508 ANXA2P2A6NMY6 339 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 ANXA2P07355 339 aaKnown RBP13.81□□□□□ -0.2
CSPG4-201ENST00000308508 RARRES1P49788 294 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 GCNT6Q5T4J0 391 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 ZCCHC12Q6PEW1 402 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 LSM14AQ8ND56 463 aaKnown RBP13.81□□□□□ -0.2
CSPG4-201ENST00000308508 RHOJQ9H4E5 214 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 EVA1BQ9NVM1 165 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 H6PDO95479 791 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 TSPAN5P62079 268 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 PFKPQ01813 784 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 SRSF11Q05519 484 aaKnown RBP13.81□□□□□ -0.2
CSPG4-201ENST00000308508 FAM171A1Q5VUB5 890 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 AP2M1Q96CW1 435 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 ACAT2Q9BWD1 397 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 RIOX1Q9H6W3 641 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 RGS17Q9UGC6 210 aaPredicted RBP13.81□□□□□ -0.2
CSPG4-201ENST00000308508 NOTOA8MTQ0 251 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 ACKR2O00590 384 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 ERAL1O75616 437 aaKnown RBP13.81□□□□□ -0.2
CSPG4-201ENST00000308508 NOL4O94818 638 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 DCDC1P59894 354 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 SIM2Q14190 667 aaPredicted RBP13.81□□□□□ -0.2
CSPG4-201ENST00000308508 FAM76BQ5HYJ3 339 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 RAB11FIP2Q7L804 512 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 LINGO2Q7L985 606 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 NIPA1Q7RTP0 329 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 MKL1Q969V6 931 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 NMUR2Q9GZQ4 415 aa13.81□□□□□ -0.2
CSPG4-201ENST00000308508 TIMM13Q9Y5L4 95 aaPredicted RBP13.81□□□□□ -0.2
CSPG4-201ENST00000308508 MBD5Q9P267 1494 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 GON4LQ3T8J9 2241 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 DHX15O43143 795 aaKnown RBP13.8□□□□□ -0.2
CSPG4-201ENST00000308508 SCN2BO60939 215 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 COL6A2P12110 1019 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 GRK5P34947 590 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 CRB1P82279 1406 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 C15orf59Q2T9L4 293 aaPredicted RBP13.8□□□□□ -0.2
CSPG4-201ENST00000308508 SMU1Q2TAY7 513 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 PLEKHG6Q3KR16 790 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 C16orf59Q7L2K0 433 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 CEP76Q8TAP6 659 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 C7orf26Q96N11 449 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 CNPPD1Q9BV87 410 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 BANF1O75531 89 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 NCK1P16333 377 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 ATP5C1P36542 298 aaKnown RBP13.8□□□□□ -0.2
CSPG4-201ENST00000308508 GTF2A2P52657 109 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 BNIP1Q12981 228 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 OGFOD2Q6N063 350 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 CHRDL2Q6WN34 429 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 SRFBP1Q8NEF9 429 aaKnown RBP13.8□□□□□ -0.2
CSPG4-201ENST00000308508 KIF20BQ96Q89 1820 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 SPATA31A3Q5VYP0 1347 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 CLPXO76031 633 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 POMCP01189 267 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 KIR3DL1P43629 444 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 GRIK4Q16099 956 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 FAM183BPQ6ZVS7 135 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms