RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 APTXQ7Z2E3 356 aaKnown RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 PAGE2Q7Z2X7 111 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 ARMC8Q8IUR7 673 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 EID2Q8N6I1 236 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 SLC35B2Q8TB61 432 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 CDRT15Q96T59 188 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 GRHL1Q9NZI5 618 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 NUFIP1Q9UHK0 495 aaKnown RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 KLF15Q9UIH9 416 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 IFT52Q9Y366 437 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 RPL36Q9Y3U8 105 aaKnown RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 FAM25EA8MYX2 175 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 USP17L10C9JJH3 530 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 PLOD2O00469 737 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 PDCD5O14737 125 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 B4GALT4O60513 344 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 GLP2RO95838 553 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 RLN1P04808 185 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 KLF10Q13118 480 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 SCGB2A2Q13296 93 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 NFE2L1Q14494 772 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 USF2Q15853 346 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 HKDC1Q2TB90 917 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 AFTPHQ6ULP2 937 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 FBXO39Q8N4B4 442 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 AIFM3Q96NN9 605 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 CCDC115Q96NT0 180 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 HSD17B14Q9BPX1 270 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 GGA3Q9NZ52 723 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 NUDT5Q9UKK9 219 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 CRYL1Q9Y2S2 319 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 DAGLAQ9Y4D2 1042 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 UNC13CQ8NB66 2214 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-201ENST00000303395 FAM86C2PA6NEL3 165 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 MGAT4DA6NG13 374 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 SSNA1O43805 119 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 CD58P19256 250 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 GLDCP23378 1020 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 CCR4P51679 360 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 NME3Q13232 169 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 SEMA5AQ13591 1074 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 ZNF280BQ86YH2 543 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 CPSF7Q8N684 471 aaKnown RBP5.22□□□□□ -1.57
SCN1A-201ENST00000303395 UBR7Q8N806 425 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 OR5K1Q8NHB7 308 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 UBASH3BQ8TF42 649 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 GTPBP2Q9BX10 602 aaKnown RBP5.22□□□□□ -1.57
SCN1A-201ENST00000303395 CADM1Q9BY67 442 aaKnown RBP5.22□□□□□ -1.57
SCN1A-201ENST00000303395 TXLNGYQ9BZA5 131 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 GRIP2Q9C0E4 1043 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 ELOVL4Q9GZR5 314 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 HCN3Q9P1Z3 774 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 CHKBQ9Y259 395 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 INVSQ9Y283 1065 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 H7C4K7 107 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 CCNKO75909 580 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 GH1P01241 217 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 IL1RNP18510 177 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 CYP2A7P20853 494 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 ENDOUP21128 410 aaKnown RBP5.22□□□□□ -1.57
SCN1A-201ENST00000303395 CPA2P48052 419 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 PTPROQ16827 1216 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 C16orf46Q6P387 395 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 PAOXQ6QHF9 649 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 IRF2BP1Q8IU81 584 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 ZNF655Q8N720 491 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-201ENST00000303395 FAM213AQ9BRX8 229 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 CELF4Q9BZC1 486 aaKnown RBP5.22□□□□□ -1.57
SCN1A-201ENST00000303395 MROH8Q9H579 483 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 NMRK2Q9NPI5 230 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 UBR1Q8IWV7 1749 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 C1orf232A0A0U1RR37 186 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 PRORSD1PA6NEY8 169 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 DLGAP1O14490 977 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 FPGTO14772 594 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 DDX3YO15523 660 aaKnown RBP5.22□□□□□ -1.57
SCN1A-201ENST00000303395 LRRTM2O43300 516 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 GMFGO60234 142 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 PROCP04070 461 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 CDH13P55290 713 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 STXBP1P61764 594 aaKnown RBP5.22□□□□□ -1.57
SCN1A-201ENST00000303395 SRSF11Q05519 484 aaKnown RBP5.22□□□□□ -1.57
SCN1A-201ENST00000303395 LAPTM5Q13571 262 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 PIGGQ5H8A4 983 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 CRTC3Q6UUV7 619 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 SV2AQ7L0J3 742 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 SLC26A9Q7LBE3 791 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 GATAD2AQ86YP4 633 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 LRRC71Q8N4P6 559 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 VGLL2Q8N8G2 317 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 NIPAL2Q9H841 368 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 GULP1Q9UBP9 304 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 PNMA8BQ9ULN7 279 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-201ENST00000303395 ERVK-11Q9UQG0 969 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 RPH3AQ9Y2J0 694 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-201ENST00000303395 SCN4AP35499 1836 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 TCRBV9S1A1TA0A576 114 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 HSD17B1P14061 328 aa5.22□□□□□ -1.57
SCN1A-201ENST00000303395 BMP6P22004 513 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms