RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 CACNG3O60359 315 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 NRP2O60462 931 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 ATE1O95260 518 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 C8AP07357 584 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 GMPRP36959 345 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 MRPL19P49406 292 aaKnown RBP10.3□□□□□ -0.76
UPF3B-201ENST00000276201 BCAT1P54687 386 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 RPS3AP61247 264 aaKnown RBP10.3□□□□□ -0.76
UPF3B-201ENST00000276201 ZP2Q05996 745 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 ILF2Q12905 390 aaKnown RBP10.3□□□□□ -0.76
UPF3B-201ENST00000276201 TMTC4Q5T4D3 741 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 ABRAXAS1Q6UWZ7 409 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 ADHFE1Q8IWW8 467 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 RNF148Q8N7C7 305 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 ZNF461Q8TAF7 563 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 PTCD2Q8WV60 388 aaKnown RBP10.3□□□□□ -0.76
UPF3B-201ENST00000276201 CENPNQ96H22 339 aaPredicted RBP10.3□□□□□ -0.76
UPF3B-201ENST00000276201 CIB1Q99828 191 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 TRMOQ9BU70 441 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 SEMA6AQ9H2E6 1030 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 POMKQ9H5K3 350 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 NOL11Q9H8H0 719 aaKnown RBP10.3□□□□□ -0.76
UPF3B-201ENST00000276201 CAB39LQ9H9S4 337 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 GPN2Q9H9Y4 310 aaPredicted RBP10.3□□□□□ -0.76
UPF3B-201ENST00000276201 SMOXQ9NWM0 555 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 ZNF639Q9UID6 485 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 BDP1A6H8Y1 2624 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 C5orf42Q9H799 3197 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 H0YAE9 185 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 BOLA2-SMG1P6H3BVE0 249 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 MRASO14807 208 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 UBDO15205 165 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 SEC24AO95486 1093 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 VNN2O95498 520 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 JUNP05412 331 aaKnown RBP10.3□□□□□ -0.76
UPF3B-201ENST00000276201 GPIP06744 558 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 OCM2P0CE71 109 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 OCMP0CE72 109 aaPredicted RBP10.3□□□□□ -0.76
UPF3B-201ENST00000276201 CPB1P15086 417 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 MTHFRP42898 656 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 HLCSP50747 726 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 SLC5A3P53794 718 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 RAB10P61026 200 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 SCAPQ12770 1279 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 BCL2A1Q16548 175 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 TPGS2Q68CL5 300 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 GRAMD4Q6IC98 578 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 CES3Q6UWW8 571 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 ISLR2Q6UXK2 745 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 RNF19BQ6ZMZ0 732 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 PID1Q7Z2X4 250 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 LIMS2Q7Z4I7 341 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 LINC00523Q86TU6 105 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 METTL23Q86XA0 190 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 CRYBG2Q8N1P7 616 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 MINDY1Q8N5J2 469 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 PCYOX1LQ8NBM8 494 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 ZSCAN18Q8TBC5 510 aaPredicted RBP10.3□□□□□ -0.76
UPF3B-201ENST00000276201 NTAN1Q96AB6 310 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 RIPOR3Q96MK2 946 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 C1orf50Q9BV19 199 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 PCDHAC1Q9H158 963 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 SLC39A10Q9ULF5 831 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 NDUFAF1Q9Y375 327 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 TCAF1Q9Y4C2 921 aa10.3□□□□□ -0.76
UPF3B-201ENST00000276201 DENND4AQ7Z401 1863 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 TTC24A2A3L6 582 aaPredicted RBP10.29□□□□□ -0.76
UPF3B-201ENST00000276201 HUS1O60921 280 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 EIF2S1P05198 315 aaKnown RBP10.29□□□□□ -0.76
UPF3B-201ENST00000276201 UMPSP11172 480 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 IL10P22301 178 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 CAPGP40121 348 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 CCT8P50990 548 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 CDH15P55291 814 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 USP10Q14694 798 aaKnown RBP10.29□□□□□ -0.76
UPF3B-201ENST00000276201 RAB39AQ14964 217 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 SOWAHAQ2M3V2 549 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 FAM182AQ5T1J6 154 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 ANKRD26P1Q6NSI1 321 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 OSTM1Q86WC4 334 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 EPHX4Q8IUS5 362 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 CENPSQ8N2Z9 138 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 TOP6BLQ8N6T0 577 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 PCDH20Q8N6Y1 951 aaKnown RBP10.29□□□□□ -0.76
UPF3B-201ENST00000276201 TSPEARQ8WU66 669 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 SMG7Q92540 1137 aaKnown RBP10.29□□□□□ -0.76
UPF3B-201ENST00000276201 HDAC11Q96DB2 347 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 SCYL1Q96KG9 808 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 NECTIN4Q96NY8 510 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 PHF12Q96QT6 1004 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 NEURL2Q9BR09 285 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 MLPHQ9BV36 600 aaPredicted RBP10.29□□□□□ -0.76
UPF3B-201ENST00000276201 PHF7Q9BWX1 381 aaPredicted RBP10.29□□□□□ -0.76
UPF3B-201ENST00000276201 PRKD2Q9BZL6 878 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 PAIP1Q9H074 479 aaKnown RBP10.29□□□□□ -0.76
UPF3B-201ENST00000276201 PFDN4Q9NQP4 134 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 IARS2Q9NSE4 1012 aaKnown RBP10.29□□□□□ -0.76
UPF3B-201ENST00000276201 ACTR3BQ9P1U1 418 aa10.29□□□□□ -0.76
UPF3B-201ENST00000276201 AFF4Q9UHB7 1163 aaKnown RBP10.29□□□□□ -0.76
UPF3B-201ENST00000276201 ERGIC3Q9Y282 383 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms