RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 ESR1P03372 595 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 CYBBP04839 570 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 ANPEPP15144 967 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 PFKLP17858 780 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 TSPAN8P19075 237 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 MTTPP55157 894 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 ADARP55265 1226 aaKnown RBP12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 NAA20P61599 178 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 LMAN2Q12907 356 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 ART3Q13508 389 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 SQLEQ14534 574 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 PTPRRQ15256 657 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 MAPRE2Q15555 327 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 CLEC6AQ6EIG7 209 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 UGT3A1Q6NUS8 523 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 LILRA6Q6PI73 481 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 LYSMD3Q7Z3D4 306 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 CAMK1DQ8IU85 385 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 DSELQ8IZU8 1212 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 FBXO39Q8N4B4 442 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 ZNF784Q8NCA9 323 aaPredicted RBP12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 KREMEN2Q8NCW0 462 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 FIBINQ8TAL6 211 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 DNAJC9Q8WXX5 260 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 CCDC124Q96CT7 223 aaKnown RBP12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 RCN3Q96D15 328 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 NAF1Q96HR8 494 aaKnown RBP12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 OCEL1Q9H607 264 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 ASAH2Q9NR71 780 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 PLK2Q9NYY3 685 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 EVLQ9UI08 416 aaPredicted RBP12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 POMPQ9Y244 141 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 GOLGA8CPA6NN73 597 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 LEFTY2O00292 366 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 NIPSNAP2O75323 286 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 SIX3O95343 332 aaPredicted RBP12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 IGSF6O95976 241 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 FGF4P08620 206 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 ALPIP09923 528 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 HSPA1AP0DMV8 641 aaKnown RBP12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 HSPA1BP0DMV9 641 aaKnown RBP12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 CD1EP15812 388 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 CHRM3P20309 590 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 CDH13P55290 713 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 IL2P60568 153 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 SH3BP2P78314 561 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 XIAPP98170 497 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 GEN1Q17RS7 908 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 CMPK2Q5EBM0 449 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 CTSL3PQ5NE16 218 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 CERS6Q6ZMG9 384 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 HPS6Q86YV9 775 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 KLHL23Q8NBE8 558 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 SIDT2Q8NBJ9 832 aaKnown RBP12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 OR6K2Q8NGY2 324 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 SHKBP1Q8TBC3 707 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 NRG4Q8WWG1 115 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 KCNJ9Q92806 393 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 C19orf60Q96EN9 201 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 CORO1BQ9BR76 489 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 EMILIN2Q9BXX0 1053 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 MID1IP1Q9NPA3 183 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 IL23AQ9NPF7 189 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 ABCB8Q9NUT2 735 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 NMRK1Q9NWW6 199 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 TMCO1Q9UM00 188 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 WASF2Q9Y6W5 498 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 ZNF106Q9H2Y7 1883 aaKnown RBP12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 A0A0U1RQS6 177 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 NPEPPSL1A6NEC2 478 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 CDC7O00311 574 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 BTN3A1O00481 513 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 MAP3K7O43318 606 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 HTRA2O43464 458 aaPredicted RBP12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 CLASP2O75122 1294 aaKnown RBP12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 SOCS5O75159 536 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 ECI2O75521 394 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 GJA1P17302 382 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 ATP6V1C1P21283 382 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 EEF1DP29692 281 aaKnown RBP12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 CD70P32970 193 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 ERFP50548 548 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 TSNQ15631 228 aaKnown RBP12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 PLEKHG6Q3KR16 790 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 TCHHL1Q5QJ38 904 aaPredicted RBP12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 BNC2Q6ZN30 1099 aaPredicted RBP12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 PGAM4Q8N0Y7 254 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 CD200R1Q8TD46 325 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 FUBP1Q96AE4 644 aaKnown RBP12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 LINGO1Q96FE5 620 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 C19orf43Q9BQ61 176 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 MRPL1Q9BYD6 325 aaKnown RBP12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 ATP13A3Q9H7F0 1226 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 ZFYVE1Q9HBF4 777 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 S100A14Q9HCY8 104 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 GALPQ9UBC7 116 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 PCDHB1Q9Y5F3 818 aa12.85□□□□□ -0.35
SPTLC1-201ENST00000262554 MTCL1Q9Y4B5 1905 aaKnown RBP12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 A0A0J9YYE9 177 aa12.84□□□□□ -0.35
SPTLC1-201ENST00000262554 C1orf232A0A0U1RR37 186 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms