RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ZNF182P17025 639 aaPredicted RBP10.64□□□□□ -0.71
USP28-201ENST00000003302 RPS24P62847 133 aaKnown RBP10.64□□□□□ -0.71
USP28-201ENST00000003302 MRPS6P82932 125 aaKnown RBP10.64□□□□□ -0.71
USP28-201ENST00000003302 CYP51A1Q16850 503 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 CYBRD1Q53TN4 286 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 LINGO4Q6UY18 593 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 ERMP1Q7Z2K6 904 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 ARHGAP18Q8N392 663 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 RMND5BQ96G75 393 aaPredicted RBP10.64□□□□□ -0.71
USP28-201ENST00000003302 ANKRD60Q9BZ19 345 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 SMOC2Q9H3U7 446 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 NTN4Q9HB63 628 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 ENTPD7Q9NQZ7 604 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 FARSBQ9NSD9 589 aaKnown RBP10.64□□□□□ -0.71
USP28-201ENST00000003302 RSL24D1Q9UHA3 163 aaKnown RBP10.64□□□□□ -0.71
USP28-201ENST00000003302 TRPC5OSA6NMA1 111 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 IL7RP16871 459 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 ITGB6P18564 788 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 GDF5P43026 501 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 NR1H2P55055 460 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 GTDC1Q4AE62 458 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 MARC1Q5VT66 337 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 AGAP9Q5VTM2 703 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 TMEM125Q96AQ2 219 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 HAUS8Q9BT25 410 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 DNAAF2Q9NVR5 837 aaKnown RBP10.64□□□□□ -0.71
USP28-201ENST00000003302 EIF2B4Q9UI10 523 aaKnown RBP10.64□□□□□ -0.71
USP28-201ENST00000003302 SCN10AQ9Y5Y9 1956 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 GBF1Q92538 1859 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 ECI2O75521 394 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 PRSS23O95084 383 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 STAMBPO95630 424 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 COL6A2P12110 1019 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 GFAPP14136 432 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 HOXC8P31273 242 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 SLC6A4P31645 630 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 PIGAP37287 484 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 CCT8P50990 548 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 CCR3P51677 355 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 KCTD21Q4G0X4 260 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 AARS2Q5JTZ9 985 aaKnown RBP10.63□□□□□ -0.71
USP28-201ENST00000003302 GALNT10Q86SR1 603 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 LCA5Q86VQ0 697 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 CDYL2Q8N8U2 506 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 UHRF1Q96T88 793 aaPredicted RBP10.63□□□□□ -0.71
USP28-201ENST00000003302 GPR21Q99679 349 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 SLC25A51Q9H1U9 297 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 EPS8L2Q9H6S3 715 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 PRDM5Q9NQX1 630 aaPredicted RBP10.63□□□□□ -0.71
USP28-201ENST00000003302 PCDHA9Q9Y5H5 950 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 SQORQ9Y6N5 450 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 A8MX80 341 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 SRP72O76094 671 aaKnown RBP10.63□□□□□ -0.71
USP28-201ENST00000003302 VNN2O95498 520 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 F9P00740 461 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 PRKACGP22612 351 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 SMYD5Q6GMV2 418 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 OR6K2Q8NGY2 324 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 SARS2Q9NP81 518 aaKnown RBP10.63□□□□□ -0.71
USP28-201ENST00000003302 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.63□□□□□ -0.71
USP28-201ENST00000003302 VPS4AQ9UN37 437 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 TCRBV5S2A0A599 114 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 H2AFYO75367 372 aaKnown RBP10.63□□□□□ -0.71
USP28-201ENST00000003302 TSPAN12O95859 305 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 GEMP55040 296 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 DYNC1I2Q13409 638 aaKnown RBP10.63□□□□□ -0.71
USP28-201ENST00000003302 PTGR1Q14914 329 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 C16orf72Q14CZ0 275 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 SLC14A2Q15849 920 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 MORN1Q5T089 497 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 LETMD1Q6P1Q0 360 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 Q6ZSR9 355 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 ZNF467Q7Z7K2 595 aaPredicted RBP10.63□□□□□ -0.71
USP28-201ENST00000003302 OR4K2Q8NGD2 314 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 EEF1AKMT1Q8WVE0 214 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 AURKBQ96GD4 344 aaPredicted RBP10.63□□□□□ -0.71
USP28-201ENST00000003302 MUS81Q96NY9 551 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 ACBD6Q9BR61 282 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 CCM2LQ9NUG4 571 aaPredicted RBP10.63□□□□□ -0.71
USP28-201ENST00000003302 GPR45Q9Y5Y3 372 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 UPK1AO00322 258 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 CD3EAPO15446 510 aaKnown RBP10.63□□□□□ -0.71
USP28-201ENST00000003302 KATNA1O75449 491 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 FDXRP22570 491 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 MERTKQ12866 999 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 UGP2Q16851 508 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 PPP4R4Q6NUP7 873 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 LZTR1Q8N653 840 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 SLC39A13Q96H72 371 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 BARD1Q99728 777 aaKnown RBP10.63□□□□□ -0.71
USP28-201ENST00000003302 SMURF2Q9HAU4 748 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 ABCD2Q9UBJ2 740 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 MYRFQ9Y2G1 1151 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 PTCH2Q9Y6C5 1203 aa10.63□□□□□ -0.71
USP28-201ENST00000003302 A0A087X1B8 175 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 RNF103-CHMP3A0A140T963 221 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 MOXD2PA6NHM9 499 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 H3BMQ9 156 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 AZIN1O14977 448 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 MTSS1O43312 755 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms