RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ORAI1Q96D31 301 aa3.94□□□□□ -1.78
CD44-239ENST00000639002 APOPT1Q96IL0 206 aa3.94□□□□□ -1.78
CD44-239ENST00000639002 ST6GAL2Q96JF0 529 aa3.94□□□□□ -1.78
CD44-239ENST00000639002 NEUROD6Q96NK8 337 aa3.94□□□□□ -1.78
CD44-239ENST00000639002 VCYO14598 125 aa3.93□□□□□ -1.78
CD44-239ENST00000639002 ZNHIT1O43257 154 aa3.93□□□□□ -1.78
CD44-239ENST00000639002 EGFP01133 1207 aa3.93□□□□□ -1.78
CD44-239ENST00000639002 IGHV4-39P01824 125 aa3.93□□□□□ -1.78
CD44-239ENST00000639002 FASLGP48023 281 aa3.93□□□□□ -1.78
CD44-239ENST00000639002 HOXA1P49639 335 aaPredicted RBP3.93□□□□□ -1.78
CD44-239ENST00000639002 EEF1A1P68104 462 aaKnown RBP3.93□□□□□ -1.78
CD44-239ENST00000639002 FGFBP1Q14512 234 aa3.93□□□□□ -1.78
CD44-239ENST00000639002 EEF1A1P5Q5VTE0 462 aa3.93□□□□□ -1.78
CD44-239ENST00000639002 FRG2Q64ET8 278 aa3.93□□□□□ -1.78
CD44-239ENST00000639002 SLC35E4Q6ICL7 350 aa3.93□□□□□ -1.78
CD44-239ENST00000639002 CYP26C1Q6V0L0 522 aa3.93□□□□□ -1.78
CD44-239ENST00000639002 RRM2BQ7LG56 351 aa3.93□□□□□ -1.78
CD44-239ENST00000639002 MYPOPQ86VE0 399 aaPredicted RBP3.93□□□□□ -1.78
CD44-239ENST00000639002 OR52I2Q8NH67 350 aa3.93□□□□□ -1.78
CD44-239ENST00000639002 UBXN10Q96LJ8 280 aa3.93□□□□□ -1.78
CD44-239ENST00000639002 BARHL1Q9BZE3 327 aa3.93□□□□□ -1.78
CD44-239ENST00000639002 PPCSQ9HAB8 311 aa3.93□□□□□ -1.78
CD44-239ENST00000639002 PPP1R14DQ9NXH3 145 aa3.93□□□□□ -1.78
CD44-239ENST00000639002 UTYO14607 1347 aa3.93□□□□□ -1.78
CD44-239ENST00000639002 ZCWPW2A0A1B0GU75 182 aa3.92□□□□□ -1.78
CD44-239ENST00000639002 C5orf60A6NFR6 353 aa3.92□□□□□ -1.78
CD44-239ENST00000639002 USP17L23D6RBM5 183 aa3.92□□□□□ -1.78
CD44-239ENST00000639002 SNAP23O00161 211 aa3.92□□□□□ -1.78
CD44-239ENST00000639002 POLBP06746 335 aa3.92□□□□□ -1.78
CD44-239ENST00000639002 HNRNPA1P09651 372 aaKnown RBP eCLIP3.92□□□□□ -1.78
CD44-239ENST00000639002 IFIT1P09914 478 aaKnown RBP3.92□□□□□ -1.78
CD44-239ENST00000639002 FAM106CPP0CH98 169 aa3.92□□□□□ -1.78
CD44-239ENST00000639002 CDAP32320 146 aa3.92□□□□□ -1.78
CD44-239ENST00000639002 APOBEC1P41238 236 aaKnown RBP3.92□□□□□ -1.78
CD44-239ENST00000639002 TAS2R38P59533 333 aa3.92□□□□□ -1.78
CD44-239ENST00000639002 RPP30P78346 268 aaKnown RBP3.92□□□□□ -1.78
CD44-239ENST00000639002 TLE2Q04725 743 aa3.92□□□□□ -1.78
CD44-239ENST00000639002 GALNT2Q10471 571 aa3.92□□□□□ -1.78
CD44-239ENST00000639002 DECR1Q16698 335 aa3.92□□□□□ -1.78
CD44-239ENST00000639002 USP41Q3LFD5 358 aa3.92□□□□□ -1.78
CD44-239ENST00000639002 ZNF876PQ49A33 203 aa3.92□□□□□ -1.78
CD44-239ENST00000639002 OR7E24Q6IFN5 339 aa3.92□□□□□ -1.78
CD44-239ENST00000639002 SLC27A1Q6PCB7 646 aa3.92□□□□□ -1.78
CD44-239ENST00000639002 CEACAM20Q6UY09 585 aa3.92□□□□□ -1.78
CD44-239ENST00000639002 ANKRD18AQ8IVF6 992 aa3.92□□□□□ -1.78
CD44-239ENST00000639002 NOC3LQ8WTT2 800 aaKnown RBP3.92□□□□□ -1.78
CD44-239ENST00000639002 QRFPRQ96P65 431 aa3.92□□□□□ -1.78
CD44-239ENST00000639002 IFIH1Q9BYX4 1025 aaKnown RBP3.92□□□□□ -1.78
CD44-239ENST00000639002 BRF2Q9HAW0 419 aa3.92□□□□□ -1.78
CD44-239ENST00000639002 ACSS1Q9NUB1 689 aaPredicted RBP3.92□□□□□ -1.78
CD44-239ENST00000639002 FAM118AQ9NWS6 357 aa3.92□□□□□ -1.78
CD44-239ENST00000639002 MPP6Q9NZW5 540 aa3.92□□□□□ -1.78
CD44-239ENST00000639002 ACSL5Q9ULC5 683 aa3.92□□□□□ -1.78
CD44-239ENST00000639002 TP53BP1Q12888 1972 aaPredicted RBP3.92□□□□□ -1.78
CD44-239ENST00000639002 CACNA1FO60840 1977 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 IGLV5-45A0A087WSX0 123 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 SPINT2O43291 252 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 SYNGR3O43761 229 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 PRKNO60260 465 aaPredicted RBP3.91□□□□□ -1.78
CD44-239ENST00000639002 ZNF500O60304 480 aaPredicted RBP3.91□□□□□ -1.78
CD44-239ENST00000639002 HOXB5P09067 269 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 ARCN1P48444 511 aaKnown RBP3.91□□□□□ -1.78
CD44-239ENST00000639002 CLDN20P56880 219 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 GNB1P62873 340 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 FOXM1Q08050 763 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 GAGE5Q13069 117 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 GAGE6Q13070 117 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 WDR38Q5JTN6 314 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 C18orf63Q68DL7 685 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 SIGIRRQ6IA17 410 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 ATG9AQ7Z3C6 839 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 SRBD1Q8N5C6 995 aaKnown RBP3.91□□□□□ -1.78
CD44-239ENST00000639002 SLC38A5Q8WUX1 472 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 APBB2Q92870 758 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 GCC1Q96CN9 775 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 KLHL29Q96CT2 875 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 LINGO1Q96FE5 620 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 SCRN2Q96FV2 425 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 NEURL2Q9BR09 285 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 LTB4R2Q9NPC1 389 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 SLC6A13Q9NSD5 602 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 KCND2Q9NZV8 630 aa3.91□□□□□ -1.78
CD44-239ENST00000639002 IGKV3D-15A0A087WSY6 115 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 SMIM1B2RUZ4 78 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 CTSVO60911 334 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 PEX14O75381 377 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 POLR2CP19387 275 aaPredicted RBP3.9□□□□□ -1.79
CD44-239ENST00000639002 PMP22Q01453 160 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 PTP4A2Q12974 167 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 GRIK2Q13002 908 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 BAK1Q16611 211 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 TMEM35AQ53FP2 167 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 C6orf141Q5SZD1 244 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 SLC9C2Q5TAH2 1124 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 NAA35Q5VZE5 725 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 TTI2Q6NXR4 508 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 ATF7IPQ6VMQ6 1270 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 ZNF497Q6ZNH5 498 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 CADM4Q8NFZ8 388 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 SLC44A1Q8WWI5 657 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms