RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 STC1P52823 247 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 MAPK10P53779 464 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 ACTR1AP61163 376 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 MMRN1Q13201 1228 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 C16orf72Q14CZ0 275 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 AMZ1Q400G9 498 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 PYCR3Q53H96 274 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 ANKRD20A8PQ5CZ79 823 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 GALNT13Q8IUC8 556 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 KCTD6Q8NC69 237 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 FAF2Q96CS3 445 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 COX14Q96I36 57 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 TAAR9Q96RI9 348 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 SUDS3Q9H7L9 328 aaPredicted RBP18.32■□□□□ 0.52
CLN3-241ENST00000635861 RDH14Q9HBH5 336 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 VPS18Q9P253 973 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 PCDHGA3Q9Y5H0 932 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 ST14Q9Y5Y6 855 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 IGHV5-10-1A0A0J9YXX1 117 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 RGSL1A5PLK6 1076 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 STMND1H3BQB6 276 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 CD48P09326 243 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 SFTPCP11686 197 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 POLD2P49005 469 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 TGIF1Q15583 401 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 ZNF574Q6ZN55 896 aaPredicted RBP18.32■□□□□ 0.52
CLN3-241ENST00000635861 HDAC11Q96DB2 347 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 RMI1Q9H9A7 625 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 CBX8Q9HC52 389 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 RBM22Q9NW64 420 aaKnown RBP eCLIP18.32■□□□□ 0.52
CLN3-241ENST00000635861 CD84Q9UIB8 345 aa18.32■□□□□ 0.52
CLN3-241ENST00000635861 IGHV1OR21-1A0A087WYE8 117 aa18.31■□□□□ 0.52
CLN3-241ENST00000635861 PROSCO94903 275 aa18.31■□□□□ 0.52
CLN3-241ENST00000635861 DSC2Q02487 901 aa18.31■□□□□ 0.52
CLN3-241ENST00000635861 DOK6Q6PKX4 331 aa18.31■□□□□ 0.52
CLN3-241ENST00000635861 AGBL5Q8NDL9 886 aa18.31■□□□□ 0.52
CLN3-241ENST00000635861 ARRDC2Q8TBH0 407 aa18.31■□□□□ 0.52
CLN3-241ENST00000635861 PTCD2Q8WV60 388 aaKnown RBP18.31■□□□□ 0.52
CLN3-241ENST00000635861 SCAMP4Q969E2 229 aa18.31■□□□□ 0.52
CLN3-241ENST00000635861 NUDT22Q9BRQ3 303 aa18.31■□□□□ 0.52
CLN3-241ENST00000635861 PCDH9Q9HC56 1237 aa18.31■□□□□ 0.52
CLN3-241ENST00000635861 WDR70Q9NW82 654 aa18.31■□□□□ 0.52
CLN3-241ENST00000635861 FOXJ2Q9P0K8 574 aa18.31■□□□□ 0.52
CLN3-241ENST00000635861 NENFQ9UMX5 172 aa18.31■□□□□ 0.52
CLN3-241ENST00000635861 ZNF487B1APH4 448 aa18.3■□□□□ 0.52
CLN3-241ENST00000635861 GOLGA6L19H0YKK7 550 aa18.3■□□□□ 0.52
CLN3-241ENST00000635861 PPM1DO15297 605 aa18.3■□□□□ 0.52
CLN3-241ENST00000635861 H2AFZP0C0S5 128 aa18.3■□□□□ 0.52
CLN3-241ENST00000635861 THRAP10827 490 aa18.3■□□□□ 0.52
CLN3-241ENST00000635861 SLC2A4P14672 509 aa18.3■□□□□ 0.52
CLN3-241ENST00000635861 HNRNPH3P31942 346 aaKnown RBP18.3■□□□□ 0.52
CLN3-241ENST00000635861 MAN1A1P33908 653 aa18.3■□□□□ 0.52
CLN3-241ENST00000635861 H2AFVQ71UI9 128 aa18.3■□□□□ 0.52
CLN3-241ENST00000635861 LUZP1Q86V48 1076 aa18.3■□□□□ 0.52
CLN3-241ENST00000635861 ZFAND4Q86XD8 727 aa18.3■□□□□ 0.52
CLN3-241ENST00000635861 VSIG1Q86XK7 387 aa18.3■□□□□ 0.52
CLN3-241ENST00000635861 PATE1Q8WXA2 126 aa18.3■□□□□ 0.52
CLN3-241ENST00000635861 CCDC74BQ96LY2 380 aa18.3■□□□□ 0.52
CLN3-241ENST00000635861 ZNF830Q96NB3 372 aaPredicted RBP18.3■□□□□ 0.52
CLN3-241ENST00000635861 DDA1Q9BW61 102 aa18.3■□□□□ 0.52
CLN3-241ENST00000635861 STN1Q9H668 368 aaKnown RBP18.3■□□□□ 0.52
CLN3-241ENST00000635861 KCNK4Q9NYG8 393 aa18.3■□□□□ 0.52
CLN3-241ENST00000635861 CTTNBP2NLQ9P2B4 639 aa18.3■□□□□ 0.52
CLN3-241ENST00000635861 CHKBQ9Y259 395 aa18.3■□□□□ 0.52
CLN3-241ENST00000635861 PCDHGA4Q9Y5G9 962 aa18.3■□□□□ 0.52
CLN3-241ENST00000635861 PRLP01236 227 aa18.29■□□□□ 0.52
CLN3-241ENST00000635861 GYPCP04921 128 aa18.29■□□□□ 0.52
CLN3-241ENST00000635861 TPM3P06753 285 aa18.29■□□□□ 0.52
CLN3-241ENST00000635861 CSTF2P33240 577 aaKnown RBP eCLIP18.29■□□□□ 0.52
CLN3-241ENST00000635861 ATP1A2P50993 1020 aa18.29■□□□□ 0.52
CLN3-241ENST00000635861 RAB15P59190 212 aa18.29■□□□□ 0.52
CLN3-241ENST00000635861 PTPRRQ15256 657 aa18.29■□□□□ 0.52
CLN3-241ENST00000635861 TMEM71Q6P5X7 295 aa18.29■□□□□ 0.52
CLN3-241ENST00000635861 CCDC13Q8IYE1 715 aa18.29■□□□□ 0.52
CLN3-241ENST00000635861 SFRP1Q8N474 314 aa18.29■□□□□ 0.52
CLN3-241ENST00000635861 AVL9Q8NBF6 648 aa18.29■□□□□ 0.52
CLN3-241ENST00000635861 CCHCR1Q8TD31 782 aa18.29■□□□□ 0.52
CLN3-241ENST00000635861 CPLX3Q8WVH0 158 aa18.29■□□□□ 0.52
CLN3-241ENST00000635861 CTNNBL1Q8WYA6 563 aaPredicted RBP18.29■□□□□ 0.52
CLN3-241ENST00000635861 SH3KBP1Q96B97 665 aa18.29■□□□□ 0.52
CLN3-241ENST00000635861 ARHGAP9Q9BRR9 750 aa18.29■□□□□ 0.52
CLN3-241ENST00000635861 RIOK2Q9BVS4 552 aaKnown RBP18.29■□□□□ 0.52
CLN3-241ENST00000635861 ASPSCR1Q9BZE9 553 aa18.29■□□□□ 0.52
CLN3-241ENST00000635861 PKD2L2Q9NZM6 624 aa18.29■□□□□ 0.52
CLN3-241ENST00000635861 PDP2Q9P2J9 529 aa18.29■□□□□ 0.52
CLN3-241ENST00000635861 TMEM98Q9Y2Y6 226 aa18.29■□□□□ 0.52
CLN3-241ENST00000635861 TTLL3Q9Y4R7 772 aa18.29■□□□□ 0.52
CLN3-241ENST00000635861 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.29■□□□□ 0.52
CLN3-241ENST00000635861 ZNF106Q9H2Y7 1883 aaKnown RBP18.28■□□□□ 0.52
CLN3-241ENST00000635861 B4E171 279 aa18.28■□□□□ 0.52
CLN3-241ENST00000635861 DUX1O43812 170 aa18.28■□□□□ 0.52
CLN3-241ENST00000635861 CLDN7O95471 211 aa18.28■□□□□ 0.52
CLN3-241ENST00000635861 HLA-DQB2P05538 268 aa18.28■□□□□ 0.52
CLN3-241ENST00000635861 TSPAN7P41732 249 aa18.28■□□□□ 0.52
CLN3-241ENST00000635861 IHHQ14623 411 aa18.28■□□□□ 0.52
CLN3-241ENST00000635861 SLC18A3Q16572 532 aa18.28■□□□□ 0.52
CLN3-241ENST00000635861 LINC00303Q3SY05 128 aa18.28■□□□□ 0.52
CLN3-241ENST00000635861 CHCHD2P9Q5T1J5 151 aaPredicted RBP18.28■□□□□ 0.52
CLN3-241ENST00000635861 HENMT1Q5T8I9 393 aaKnown RBP18.28■□□□□ 0.52
CLN3-241ENST00000635861 RFLNAQ6ZTI6 216 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms