RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 ART3Q13508 389 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 ARHGEF6Q15052 776 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 SCIMPQ6UWF3 145 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 SETD3Q86TU7 594 aaPredicted RBP10.59□□□□□ -0.71
CUX1-221ENST00000622516 RP9Q8TA86 221 aaKnown RBP10.59□□□□□ -0.71
CUX1-221ENST00000622516 LPGAT1Q92604 370 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 TNKS2Q9H2K2 1166 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 ZNF385DQ9H6B1 395 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 EML4Q9HC35 981 aaKnown RBP10.59□□□□□ -0.71
CUX1-221ENST00000622516 SLC24A3Q9HC58 644 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 S100A14Q9HCY8 104 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 ADAMTS6Q9UKP5 1117 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 BTRCQ9Y297 605 aa10.59□□□□□ -0.71
CUX1-221ENST00000622516 PRUNE2Q8WUY3 3088 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 NPEPPSL1A6NEC2 478 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 TRPC5OSA6NMA1 111 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 GPC4O75487 556 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 XRCC1P18887 633 aaPredicted RBP10.58□□□□□ -0.72
CUX1-221ENST00000622516 ATP6V1C1P21283 382 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 LPOP22079 712 aaPredicted RBP10.58□□□□□ -0.72
CUX1-221ENST00000622516 DNAJB1P25685 340 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 PRDX3P30048 256 aaKnown RBP10.58□□□□□ -0.72
CUX1-221ENST00000622516 EPHB3P54753 998 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 MTTPP55157 894 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 MS4A2Q01362 244 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 TAF1AQ15573 450 aaPredicted RBP10.58□□□□□ -0.72
CUX1-221ENST00000622516 AGKQ53H12 422 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 ANO7Q6IWH7 933 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 IZUMO2Q6UXV1 221 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 GAREM2Q75VX8 874 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 BIRC8Q96P09 236 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 ABCG8Q9H221 673 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 EVLQ9UI08 416 aaPredicted RBP10.58□□□□□ -0.72
CUX1-221ENST00000622516 TIMM22Q9Y584 194 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 BTN3A1O00481 513 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 UBDO15205 165 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 MAP3K7O43318 606 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 SMIM24O75264 130 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 CDK14O94921 469 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 HERVK_113P63132 956 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 CEACAM7Q14002 265 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 NAIF1Q69YI7 327 aaPredicted RBP10.58□□□□□ -0.72
CUX1-221ENST00000622516 PAOXQ6QHF9 649 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 LYSMD3Q7Z3D4 306 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 SLC22A9Q8IVM8 553 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 MFN1Q8IWA4 741 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 DDIASQ8IXT1 998 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 PPFIBP2Q8ND30 876 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 GPR150Q8NGU9 434 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 MICAL1Q8TDZ2 1067 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 EEF1AKMT1Q8WVE0 214 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 MYLIPQ8WY64 445 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 MAELQ96JY0 434 aaKnown RBP10.58□□□□□ -0.72
CUX1-221ENST00000622516 SLC39A3Q9BRY0 314 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 ERVK-6Q9BXR3 956 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 WDR41Q9HAD4 459 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 RNF112Q9ULX5 631 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 ASB1Q9Y576 335 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 DNAJC15Q9Y5T4 150 aa10.58□□□□□ -0.72
CUX1-221ENST00000622516 A0A1W2PRU2 124 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 GREM1O60565 184 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 CLASP2O75122 1294 aaKnown RBP10.57□□□□□ -0.72
CUX1-221ENST00000622516 LINC00032P0C843 101 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 RAG1P15918 1043 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 EEF1DP29692 281 aaKnown RBP10.57□□□□□ -0.72
CUX1-221ENST00000622516 IRX1P78414 480 aaPredicted RBP10.57□□□□□ -0.72
CUX1-221ENST00000622516 ACBD5Q5T8D3 534 aaPredicted RBP10.57□□□□□ -0.72
CUX1-221ENST00000622516 CNKSR3Q6P9H4 555 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 FAM151BQ6UXP7 276 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 HERC6Q8IVU3 1022 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 BBS7Q8IWZ6 715 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 CPNE9Q8IYJ1 553 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 CPSF7Q8N684 471 aaKnown RBP10.57□□□□□ -0.72
CUX1-221ENST00000622516 OVCA2Q8WZ82 227 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 CCDC126Q96EE4 140 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 ATOH8Q96SQ7 321 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 YME1L1Q96TA2 773 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 IL21Q9HBE4 155 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 IRAK4Q9NWZ3 460 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 TAS2R13Q9NYV9 303 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 ADA2Q9NZK5 511 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 LHX3Q9UBR4 397 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 ANGPTL2Q9UKU9 493 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 TBX21Q9UL17 535 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 SPTBN5Q9NRC6 3674 aaKnown RBP10.57□□□□□ -0.72
CUX1-221ENST00000622516 TGM5O43548 720 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 ECI2O75521 394 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 CNPP09543 421 aaKnown RBP10.57□□□□□ -0.72
CUX1-221ENST00000622516 RAB33AQ14088 237 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 TYSND1Q2T9J0 566 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 MMEL1Q495T6 779 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 PITRM1Q5JRX3 1037 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 CTSL3PQ5NE16 218 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 TPGS2Q68CL5 300 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 UGT3A1Q6NUS8 523 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 NCEH1Q6PIU2 408 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 AFTPHQ6ULP2 937 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 CHST9Q7L1S5 443 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 LMNTD2Q8IXW0 634 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 CLDN19Q8N6F1 224 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 1732.2 ms