RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 SEL1L3Q68CR1 1132 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 TIGD7Q6NT04 549 aaPredicted RBP14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 TMEM53Q6P2H8 277 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 RANBP10Q6VN20 620 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 KYQ8NBH2 561 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 TXNDC5Q8NBS9 432 aaKnown RBP14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 OR4K2Q8NGD2 314 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 LRTOMTQ8WZ04 291 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 IL12RB2Q99665 862 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 NPAS2Q99743 824 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 CORO1BQ9BR76 489 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 PCDHAC1Q9H158 963 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 STK39Q9UEW8 545 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 TSC22D4Q9Y3Q8 395 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 SCN10AQ9Y5Y9 1956 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 H7C4K7 107 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 HOXA2O43364 376 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 SEC24AO95486 1093 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 GFAPP14136 432 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 PORP16435 677 aaPredicted RBP14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 HADHAP40939 763 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 TMED10P49755 219 aaKnown RBP14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 ECT2LQ008S8 904 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 RELAQ04206 551 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 ZNF177Q13360 481 aaPredicted RBP14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 Q6ZNX1 250 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 HOMEZQ8IX15 550 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 LZTR1Q8N653 840 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 ARL14EPQ8N8R7 260 aaPredicted RBP14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 ZNF558Q96NG5 402 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 CASD1Q96PB1 797 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 TRIM62Q9BVG3 475 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 CINPQ9BW66 212 aaPredicted RBP14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 FBRSL1Q9HCM7 1045 aaKnown RBP14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 NCKIPSDQ9NZQ3 722 aa14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 FCF1Q9Y324 198 aaKnown RBP14.44□□□□□ -0.1
SHROOM1-208ENST00000617339 FBP2O00757 339 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 ZBTB11O95625 1053 aaPredicted RBP14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 RPLP2P05387 115 aaKnown RBP14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 GRK2P25098 689 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 HOXD12P35452 270 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 SLC11A2P49281 568 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 CDK9P50750 372 aaKnown RBP14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 KPNA1P52294 538 aaPredicted RBP14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 USP41Q3LFD5 358 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 MTX3Q5HYI7 312 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 RNF219Q5W0B1 726 aaPredicted RBP14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 DDIASQ8IXT1 998 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 RMND5BQ96G75 393 aaPredicted RBP14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 KIFC1Q9BW19 673 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 WDR37Q9Y2I8 494 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 CCDC162PA2VCL2 907 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 GOT2P00505 430 aaKnown RBP14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 KLKB1P03952 638 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 SLC2A3P11169 496 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 CDKN2DP55273 166 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 CDK18Q07002 472 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 GPNMBQ14956 572 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 FAM83EQ2M2I3 478 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 CCDC153Q494R4 210 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 PITRM1Q5JRX3 1037 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 PLPP4Q5VZY2 271 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 TIFABQ6ZNK6 161 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 GPR141Q7Z602 305 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 NPAS4Q8IUM7 802 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 ELMOD1Q8N336 334 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 ACMSDQ8TDX5 336 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 CDH19Q9H159 772 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 SLC25A51Q9H1U9 297 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 PIF1Q9H611 641 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 NEU3Q9UQ49 428 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 PSMD12O00232 456 aaPredicted RBP14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 MPOP05164 745 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 RHOCP08134 193 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 RHOQP17081 205 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 EIF2B2P49770 351 aaKnown RBP14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 SMAD3P84022 425 aaKnown RBP14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 GSTM4Q03013 218 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 ELAVL2Q12926 359 aaKnown RBP14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 FAM47BQ8NA70 645 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 BTRCQ9Y297 605 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 MYRFQ9Y2G1 1151 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 PCDHB9Q9Y5E1 797 aa14.43□□□□□ -0.1
SHROOM1-208ENST00000617339 COCHO43405 550 aa14.42□□□□□ -0.1
SHROOM1-208ENST00000617339 CKMT2P17540 419 aa14.42□□□□□ -0.1
SHROOM1-208ENST00000617339 CHRM3P20309 590 aa14.42□□□□□ -0.1
SHROOM1-208ENST00000617339 XPAP23025 273 aaPredicted RBP14.42□□□□□ -0.1
SHROOM1-208ENST00000617339 RPL14P50914 215 aaKnown RBP14.42□□□□□ -0.1
SHROOM1-208ENST00000617339 HECTD2Q5U5R9 776 aa14.42□□□□□ -0.1
SHROOM1-208ENST00000617339 GPR107Q5VW38 600 aa14.42□□□□□ -0.1
SHROOM1-208ENST00000617339 ELMSAN1Q6PJG2 1045 aa14.42□□□□□ -0.1
SHROOM1-208ENST00000617339 CATSPER1Q8NEC5 780 aa14.42□□□□□ -0.1
SHROOM1-208ENST00000617339 ADCY4Q8NFM4 1077 aa14.42□□□□□ -0.1
SHROOM1-208ENST00000617339 OR9I1Q8NGQ6 314 aa14.42□□□□□ -0.1
SHROOM1-208ENST00000617339 SLC35B4Q969S0 331 aa14.42□□□□□ -0.1
SHROOM1-208ENST00000617339 GFM2Q969S9 779 aaKnown RBP14.42□□□□□ -0.1
SHROOM1-208ENST00000617339 C12orf43Q96C57 262 aaKnown RBP14.42□□□□□ -0.1
SHROOM1-208ENST00000617339 RTKNQ9BST9 563 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms