RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 ZNF449Q6P9G9 518 aa14.28□□□□□ -0.12
UPF1-211ENST00000600868 FAM151BQ6UXP7 276 aa14.28□□□□□ -0.12
UPF1-211ENST00000600868 SNX20Q7Z614 316 aa14.28□□□□□ -0.12
UPF1-211ENST00000600868 MREGQ8N565 214 aa14.28□□□□□ -0.12
UPF1-211ENST00000600868 ZBTB44Q8NCP5 570 aa14.28□□□□□ -0.12
UPF1-211ENST00000600868 OR6P1Q8NGX9 317 aa14.28□□□□□ -0.12
UPF1-211ENST00000600868 ZNF398Q8TD17 642 aa14.28□□□□□ -0.12
UPF1-211ENST00000600868 HNRNPLLQ8WVV9 542 aaKnown RBP14.28□□□□□ -0.12
UPF1-211ENST00000600868 KLK6Q92876 244 aa14.28□□□□□ -0.12
UPF1-211ENST00000600868 SCAMP4Q969E2 229 aa14.28□□□□□ -0.12
UPF1-211ENST00000600868 CERS2Q96G23 380 aa14.28□□□□□ -0.12
UPF1-211ENST00000600868 KLF6Q99612 283 aaPredicted RBP14.28□□□□□ -0.12
UPF1-211ENST00000600868 RIOK2Q9BVS4 552 aaKnown RBP14.28□□□□□ -0.12
UPF1-211ENST00000600868 VPS37BQ9H9H4 285 aa14.28□□□□□ -0.12
UPF1-211ENST00000600868 C20orf96Q9NUD7 363 aaPredicted RBP14.28□□□□□ -0.12
UPF1-211ENST00000600868 PCDHGA2Q9Y5H1 932 aa14.28□□□□□ -0.12
UPF1-211ENST00000600868 SLC30A1Q9Y6M5 507 aa14.28□□□□□ -0.12
UPF1-211ENST00000600868 UQCRHLA0A096LP55 91 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 A0A1W2PPC4 97 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 TCRBV9S1A1TA0A576 114 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 AGAP14A8MT82 685 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 RIPK2O43353 540 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 HRO43593 1189 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 ACSL3O95573 720 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 UQCRHP07919 91 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 ABHD2P08910 425 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 ITGALP20701 1170 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 HNRNPA2B1P22626 353 aaKnown RBP14.27□□□□□ -0.13
UPF1-211ENST00000600868 FOXN2P32314 431 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 STX2P32856 288 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 CACNG1Q06432 222 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 MGAT5Q09328 741 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 NFATC2Q13469 925 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 IRF4Q15306 451 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 GPR33Q49SQ1 333 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 NEPROQ6NW34 567 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 PNCKQ6P2M8 343 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 TRMT10BQ6PF06 316 aaKnown RBP14.27□□□□□ -0.13
UPF1-211ENST00000600868 LPCAT2Q7L5N7 544 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 KCNMB4Q86W47 210 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 LMNTD2Q8IXW0 634 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 GPR150Q8NGU9 434 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 CALML6Q8TD86 181 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 SCG3Q8WXD2 468 aaKnown RBP14.27□□□□□ -0.13
UPF1-211ENST00000600868 AGAP2Q99490 1192 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 ORAI3Q9BRQ5 295 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 LRFN3Q9BTN0 628 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 SPATA16Q9BXB7 569 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 EBF2Q9HAK2 575 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 MBNL1Q9NR56 388 aaKnown RBP14.27□□□□□ -0.13
UPF1-211ENST00000600868 SMOXQ9NWM0 555 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 FNDC3AQ9Y2H6 1198 aaKnown RBP14.27□□□□□ -0.13
UPF1-211ENST00000600868 HS3ST3A1Q9Y663 406 aa14.27□□□□□ -0.13
UPF1-211ENST00000600868 DOCK9Q9BZ29 2069 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 TRBV5-4A0A0C4DH59 114 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 OR51F1A6NGY5 319 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 PRAMEF26H0Y7S4 382 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 RAD51BO15315 384 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 CD3EAPO15446 510 aaKnown RBP14.26□□□□□ -0.13
UPF1-211ENST00000600868 SOD1P00441 154 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 ERVK-10P10266 1014 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 CD27P26842 260 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 AKT2P31751 481 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 TRIM23P36406 574 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 GPR1P46091 355 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 THOC5Q13769 683 aaKnown RBP14.26□□□□□ -0.13
UPF1-211ENST00000600868 ATP13A5Q4VNC0 1218 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 FASTKD1Q53R41 847 aaKnown RBP14.26□□□□□ -0.13
UPF1-211ENST00000600868 HSP90AA5PQ58FG0 334 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 ZRANB3Q5FWF4 1079 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 PMS2CLQ68D20 193 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 RAET1GQ6H3X3 334 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 MRNIPQ6NTE8 343 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 ADAMTSL4Q6UY14 1074 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 CAPN12Q6ZSI9 719 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 PTAR1Q7Z6K3 402 aaPredicted RBP14.26□□□□□ -0.13
UPF1-211ENST00000600868 SLC41A1Q8IVJ1 513 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 CNTN4Q8IWV2 1026 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 UNC5BQ8IZJ1 945 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 TMEM145Q8NBT3 493 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 GABPB2Q8TAK5 448 aaPredicted RBP14.26□□□□□ -0.13
UPF1-211ENST00000600868 DNASE2BQ8WZ79 361 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.26□□□□□ -0.13
UPF1-211ENST00000600868 ULK4Q96C45 1275 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 ZC3H10Q96K80 434 aaKnown RBP14.26□□□□□ -0.13
UPF1-211ENST00000600868 HSPA12BQ96MM6 686 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 VPS35Q96QK1 796 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 FAM167BQ9BTA0 163 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 EPB41L4BQ9H329 900 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 ASB8Q9H765 288 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 CATSPERZQ9NTU4 200 aa14.26□□□□□ -0.13
UPF1-211ENST00000600868 CEP192Q8TEP8 1941 aa14.25□□□□□ -0.13
UPF1-211ENST00000600868 ZNF318Q5VUA4 2279 aa14.25□□□□□ -0.13
UPF1-211ENST00000600868 A0A087WUV0 522 aaPredicted RBP14.25□□□□□ -0.13
UPF1-211ENST00000600868 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.25□□□□□ -0.13
UPF1-211ENST00000600868 FAM159BA6NKW6 160 aa14.25□□□□□ -0.13
UPF1-211ENST00000600868 FADS2P1A8MWK0 482 aa14.25□□□□□ -0.13
UPF1-211ENST00000600868 GOLGA8KD6RF30 607 aa14.25□□□□□ -0.13
UPF1-211ENST00000600868 GOLGA8TH3BQL2 631 aa14.25□□□□□ -0.13
UPF1-211ENST00000600868 K7ESM1 405 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms