RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	SKOR1	P84550	965 aa		12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	CDK16	Q00536	496 aa		12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	C19orf57	Q0VDD7	668 aa		12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	SLMAP	Q14BN4	828 aa		12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	UAP1	Q16222	522 aa	Predicted RBP	12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	ZNF284	Q2VY69	593 aa		12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	INO80D	Q53TQ3	878 aa	Predicted RBP	12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	ALG1L	Q6GMV1	187 aa		12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	HORMAD1	Q86X24	394 aa		12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	ANKMY2	Q8IV38	441 aa		12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	PDIK1L	Q8N165	341 aa		12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	SLC25A45	Q8N413	288 aa		12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	TMIE	Q8NEW7	156 aa		12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	OR52K1	Q8NGK4	314 aa		12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	OR2A12	Q8NGT7	310 aa		12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	UBLCP1	Q8WVY7	318 aa	Predicted RBP	12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	SLC39A7	Q92504	469 aa		12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	MRGPRX2	Q96LB1	330 aa		12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	NSMCE3	Q96MG7	304 aa		12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	FCRL3	Q96P31	734 aa	Predicted RBP	12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	MYOC	Q99972	504 aa		12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	WDR83	Q9BRX9	315 aa	Known RBP	12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	TM6SF2	Q9BZW4	377 aa		12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	LRRC40	Q9H9A6	602 aa		12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	HAUS2	Q9NVX0	235 aa		12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	GOLGA6A	Q9NYA3	693 aa		12.69	□□□□□ -0.38
UPF1-208	ENST00000600012	HELZ2	Q9BYK8	2649 aa	Known RBP	12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	ERI2	A8K979	691 aa	Known RBP	12.68	□□□□□ -0.38
UPF1-208	ENST00000600012		E7ESA3	106 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	INSIG1	O15503	277 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	PSMD3	O43242	534 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	SUN1	O94901	812 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	MT-CO3	P00414	261 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	AGT	P01019	485 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	ALPPL2	P10696	532 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	MAGEA4	P43358	317 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	RECQL	P46063	649 aa	Predicted RBP	12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	SCNN1B	P51168	640 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	PMS2	P54278	862 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	WNT3A	P56704	352 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	SESN2	P58004	480 aa	Predicted RBP	12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	SARNP	P82979	210 aa	Known RBP	12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	MPP3	Q13368	585 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	CASP8	Q14790	479 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	TBC1D25	Q3MII6	688 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	C22orf39	Q6P5X5	142 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	LRRC8B	Q6P9F7	803 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	KDM7A	Q6ZMT4	941 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	ERN2	Q76MJ5	926 aa	Known RBP	12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	KDELC2	Q7Z4H8	507 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	ABI3BP	Q7Z7G0	1075 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	ZBED8	Q8IZ13	594 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	AGGF1	Q8N302	714 aa	eCLIP	12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	MPP5	Q8N3R9	675 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	MREG	Q8N565	214 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	LSM14A	Q8ND56	463 aa	Known RBP	12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	OR13H1	Q8NG92	308 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	FAM174A	Q8TBP5	190 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	KLK6	Q92876	244 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	ARRDC3	Q96B67	414 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	TADA1	Q96BN2	335 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	ZBTB9	Q96C00	473 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	IFT43	Q96FT9	208 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	PPP1R16A	Q96I34	528 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	C9orf72	Q96LT7	481 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	PPP1R2P1	Q96PQ5	205 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	NUDCD1	Q96RS6	583 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	TBL1Y	Q9BQ87	522 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	TSPYL1	Q9H0U9	437 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	TNKS2	Q9H2K2	1166 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	NOD2	Q9HC29	1040 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	XAB2	Q9HCS7	855 aa	Known RBP	12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	CASS4	Q9NQ75	786 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	NINJ2	Q9NZG7	142 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	CHMP2B	Q9UQN3	213 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012	RAI2	Q9Y5P3	530 aa		12.68	□□□□□ -0.38
UPF1-208	ENST00000600012		A6NNZ2	444 aa		12.67	□□□□□ -0.38
UPF1-208	ENST00000600012	EIF3H	O15372	352 aa	Known RBP eCLIP	12.67	□□□□□ -0.38
UPF1-208	ENST00000600012	FFAR2	O15552	330 aa		12.67	□□□□□ -0.38
UPF1-208	ENST00000600012	PIAS2	O75928	621 aa		12.67	□□□□□ -0.38
UPF1-208	ENST00000600012	PCDH8	O95206	1070 aa		12.67	□□□□□ -0.38
UPF1-208	ENST00000600012	CKMT1A	P12532	417 aa		12.67	□□□□□ -0.38
UPF1-208	ENST00000600012	MGAT1	P26572	445 aa		12.67	□□□□□ -0.38
UPF1-208	ENST00000600012	ADRA1A	P35348	466 aa		12.67	□□□□□ -0.38
UPF1-208	ENST00000600012	HSD17B3	P37058	310 aa		12.67	□□□□□ -0.38
UPF1-208	ENST00000600012	MAGEA3	P43357	314 aa		12.67	□□□□□ -0.38
UPF1-208	ENST00000600012	CHRNA4	P43681	627 aa		12.67	□□□□□ -0.38
UPF1-208	ENST00000600012	SLC20A2	Q08357	652 aa		12.67	□□□□□ -0.38
UPF1-208	ENST00000600012	DNAJC21	Q5F1R6	531 aa	Known RBP	12.67	□□□□□ -0.38
UPF1-208	ENST00000600012	GCNT7	Q6ZNI0	430 aa		12.67	□□□□□ -0.38
UPF1-208	ENST00000600012	CAPN12	Q6ZSI9	719 aa		12.67	□□□□□ -0.38
UPF1-208	ENST00000600012	CEP128	Q6ZU80	1094 aa		12.67	□□□□□ -0.38
UPF1-208	ENST00000600012	GPR155	Q7Z3F1	870 aa		12.67	□□□□□ -0.38
UPF1-208	ENST00000600012	DCP2	Q8IU60	420 aa	Known RBP	12.67	□□□□□ -0.38
UPF1-208	ENST00000600012	IGDCC3	Q8IVU1	814 aa		12.67	□□□□□ -0.38
UPF1-208	ENST00000600012	SLC25A41	Q8N5S1	370 aa		12.67	□□□□□ -0.38
UPF1-208	ENST00000600012	DNAAF3	Q8N9W5	541 aa		12.67	□□□□□ -0.38
UPF1-208	ENST00000600012	CHST14	Q8NCH0	376 aa		12.67	□□□□□ -0.38
UPF1-208	ENST00000600012	OR6K2	Q8NGY2	324 aa		12.67	□□□□□ -0.38

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