RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 FADS3Q9Y5Q0 445 aa13.63□□□□□ -0.23
CCDC40-209ENST00000573474 FAM95CA0A1B0GW59 222 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 TPP1O14773 563 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 PRPF4O43172 522 aaKnown RBP eCLIP13.62□□□□□ -0.23
CCDC40-209ENST00000573474 AP1G1O43747 822 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 DNTTP04053 509 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 ALDOAP04075 364 aaKnown RBP13.62□□□□□ -0.23
CCDC40-209ENST00000573474 PRSS56P0CW18 603 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 C7P10643 843 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 CHRNB1P11230 501 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 TYK2P29597 1187 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 DRD3P35462 400 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 ABCG1P45844 678 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 LIG3P49916 1009 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 CDKN1CP49918 316 aaPredicted RBP13.62□□□□□ -0.23
CCDC40-209ENST00000573474 STARD6P59095 220 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 POU4F1Q01851 419 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 ZBTB16Q05516 673 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 SFSWAPQ12872 951 aaKnown RBP13.62□□□□□ -0.23
CCDC40-209ENST00000573474 NFATC2Q13469 925 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 LRRC32Q14392 662 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 USP10Q14694 798 aaKnown RBP13.62□□□□□ -0.23
CCDC40-209ENST00000573474 ACOX1Q15067 660 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 ZNF789Q5FWF6 425 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 PSAPL1Q6NUJ1 521 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.62□□□□□ -0.23
CCDC40-209ENST00000573474 RFLNAQ6ZTI6 216 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 TECPR1Q7Z6L1 1165 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 TMPRSS6Q8IU80 811 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 UBALD2Q8IYN6 164 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 ZNF687Q8N1G0 1237 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 HDDC3Q8N4P3 179 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 AADATQ8N5Z0 425 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 BANPQ8N9N5 519 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 CXorf40AQ8TE69 158 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 ELMO2Q96JJ3 720 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 CABS1Q96KC9 395 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 COQ10AQ96MF6 247 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 KLF6Q99612 283 aaPredicted RBP13.62□□□□□ -0.23
CCDC40-209ENST00000573474 OMDQ99983 421 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 MKRN2Q9H000 416 aaKnown RBP13.62□□□□□ -0.23
CCDC40-209ENST00000573474 SLC39A10Q9ULF5 831 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 ITM2BQ9Y287 266 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 CKAP5Q14008 2032 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 EYSQ5T1H1 3165 aa13.62□□□□□ -0.23
CCDC40-209ENST00000573474 TRBV5-4A0A0C4DH59 114 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 TMEM120BA0PK00 339 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 FAM47DPA6NHR8 397 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 GOLGA8RI6L899 631 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 WNT9AO14904 365 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 TSPAN6O43657 245 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 SPAG7O75391 227 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 MPOP05164 745 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 CRABP2P29373 138 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 CCNFP41002 786 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 ETV3P41162 512 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 PTGER3P43115 390 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 MAGEA12P43365 314 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 ATP1A2P50993 1020 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 SLC18A1P54219 525 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 ITGA9Q13797 1035 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 AGBL4Q5VU57 503 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 Q6ZVL8 140 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 CYP2U1Q7Z449 544 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 SERPINA9Q86WD7 417 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 SLC41A1Q8IVJ1 513 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 PNPLA1Q8N8W4 532 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 GPATCH11Q8N954 259 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 GANCQ8TET4 914 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 LPGAT1Q92604 370 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 ULK4Q96C45 1275 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 SIPA1Q96FS4 1042 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 NELL2Q99435 816 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 WRAP53Q9BUR4 548 aaKnown RBP13.61□□□□□ -0.23
CCDC40-209ENST00000573474 LMAN1LQ9HAT1 526 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 SNX15Q9NRS6 342 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 FBXL12Q9NXK8 326 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 CRLS1Q9UJA2 301 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 CRYL1Q9Y2S2 319 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 VWA7Q9Y334 891 aa13.61□□□□□ -0.23
CCDC40-209ENST00000573474 A0A1W2PP55 124 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 KANSL1LA0AUZ9 987 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 UBA6A0AVT1 1052 aaPredicted RBP13.6□□□□□ -0.23
CCDC40-209ENST00000573474 KRBA1A5PL33 1030 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 GOLGA8CPA6NN73 597 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 AGAP14A8MT82 685 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 CHURC1-FNTBB4DL54 471 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 COPEO14579 308 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 TYROBPO43914 113 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 LZTS3O60299 673 aaPredicted RBP13.6□□□□□ -0.23
CCDC40-209ENST00000573474 MMP20O60882 483 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 RNASEH2AO75792 299 aaKnown RBP13.6□□□□□ -0.23
CCDC40-209ENST00000573474 C6P13671 934 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 STMN1P16949 149 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 UGT1A6P19224 532 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 UGT1A1P22309 533 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 UGT1A4P22310 534 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 ACRV1P26436 265 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 TARSP26639 723 aaKnown RBP13.6□□□□□ -0.23
CCDC40-209ENST00000573474 UGT1A3P35503 534 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms