RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 DACH2Q96NX9 599 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 TMEM175Q9BSA9 504 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 CCDC94Q9BW85 323 aaPredicted RBP6.23□□□□□ -1.41
VPS53-212ENST00000572259 KRTAP9-8Q9BYQ0 159 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 SCAND2PQ9GZW5 306 aaPredicted RBP6.23□□□□□ -1.41
VPS53-212ENST00000572259 PCDHAC1Q9H158 963 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 MRPL46Q9H2W6 279 aaKnown RBP6.23□□□□□ -1.41
VPS53-212ENST00000572259 CUEDC2Q9H467 287 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 CWH43Q9H720 699 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 SIRT3Q9NTG7 399 aaPredicted RBP6.23□□□□□ -1.41
VPS53-212ENST00000572259 AKAP7Q9P0M2 348 aaPredicted RBP6.23□□□□□ -1.41
VPS53-212ENST00000572259 THEGQ9P2T0 379 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 DAPP1Q9UN19 280 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 RUVBL1Q9Y265 456 aaKnown RBP6.23□□□□□ -1.41
VPS53-212ENST00000572259 SSX2IPQ9Y2D8 614 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 ACTL7AQ9Y615 435 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 TCF20Q9UGU0 1960 aaKnown RBP6.23□□□□□ -1.41
VPS53-212ENST00000572259 CUL9Q8IWT3 2517 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 KIAA1671Q9BY89 1806 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 A0A1W2PQ09 198 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 ARL5CA6NH57 179 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 AKR1B15C9JRZ8 316 aaPredicted RBP6.22□□□□□ -1.41
VPS53-212ENST00000572259 BOLA2-SMG1P6H3BVE0 249 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 PGRMC2O15173 223 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 GRM6O15303 877 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 TP73O15350 636 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 SLC16A4O15374 487 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 CLDN3O15551 220 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 DNPH1O43598 174 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 KLHL41O60662 606 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 TSC22D2O75157 780 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 STC2O76061 302 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 ITGB1P05556 798 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 INHBBP09529 407 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 PCSK1P29120 753 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 MSX2P35548 267 aaPredicted RBP6.22□□□□□ -1.41
VPS53-212ENST00000572259 CAPZA2P47755 286 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 HARS2P49590 506 aaKnown RBP6.22□□□□□ -1.41
VPS53-212ENST00000572259 CTXN1P60606 82 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 C17orf67Q0P5P2 114 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 MYO1EQ12965 1108 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 AIMP2Q13155 320 aaKnown RBP6.22□□□□□ -1.41
VPS53-212ENST00000572259 CAMK1Q14012 370 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 HABP2Q14520 560 aaPredicted RBP6.22□□□□□ -1.41
VPS53-212ENST00000572259 ELAVL1Q15717 326 aaKnown RBP6.22□□□□□ -1.41
VPS53-212ENST00000572259 TYSND1Q2T9J0 566 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 FAM214AQ32MH5 1076 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 KBTBD12Q3ZCT8 623 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 ZNF805Q5CZA5 627 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.22□□□□□ -1.41
VPS53-212ENST00000572259 ADALQ6DHV7 355 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 TCTN3Q6NUS6 607 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 PLEKHM3Q6ZWE6 761 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 MON1AQ86VX9 555 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 IQCF2Q8IXL9 164 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 CCDC65Q8IXS2 484 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 FUKQ8N0W3 1084 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 D2HGDHQ8N465 521 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 SPATA20Q8TB22 786 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 IFI44Q8TCB0 444 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 CPT1CQ8TCG5 803 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 SHC3Q92529 594 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 SIPA1Q96FS4 1042 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 BORCS6Q96GS4 357 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 GAD1Q99259 594 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 CDCA3Q99618 268 aaPredicted RBP6.22□□□□□ -1.41
VPS53-212ENST00000572259 CPPED1Q9BRF8 314 aaPredicted RBP6.22□□□□□ -1.41
VPS53-212ENST00000572259 CRACR2AQ9BSW2 395 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 PANK2Q9BZ23 570 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 SLC25A18Q9H1K4 315 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 TLE6Q9H808 572 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 MAGEF1Q9HAY2 307 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 POLD4Q9HCU8 107 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 PFDN4Q9NQP4 134 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 ENTPD7Q9NQZ7 604 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 SNX15Q9NRS6 342 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 TBC1D13Q9NVG8 400 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 ACTR3BQ9P1U1 418 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 HECAQ9UBI9 543 aaPredicted RBP6.22□□□□□ -1.41
VPS53-212ENST00000572259 RCOR1Q9UKL0 485 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 EXOC7Q9UPT5 735 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 TNFSF13BQ9Y275 285 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 TTC28Q96AY4 2481 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 PLXNA4Q9HCM2 1894 aa6.22□□□□□ -1.41
VPS53-212ENST00000572259 GOLGA6L4A6NEF3 574 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 NPIPB15A6NHN6 443 aaPredicted RBP6.21□□□□□ -1.42
VPS53-212ENST00000572259 A8MV72 311 aaPredicted RBP6.21□□□□□ -1.42
VPS53-212ENST00000572259 B5MCH6 92 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 INPPL1O15357 1258 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 KLK10O43240 276 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 B4GALT5O43286 388 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 TOM1L1O75674 476 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 IPO13O94829 963 aaKnown RBP6.21□□□□□ -1.42
VPS53-212ENST00000572259 KIAA0754O94854 1291 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 KIF20AO95235 890 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 CXCL14O95715 111 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 OLFM2O95897 454 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 POMCP01189 267 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 GALTP07902 379 aa6.21□□□□□ -1.42
VPS53-212ENST00000572259 MYBL1P10243 752 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms