RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 USP8P40818 1118 aa17.9■□□□□ 0.46
CLK3-227ENST00000570296 YBEYP58557 167 aaPredicted RBP17.9■□□□□ 0.46
CLK3-227ENST00000570296 ART3Q13508 389 aa17.9■□□□□ 0.46
CLK3-227ENST00000570296 FAM72AQ5TYM5 149 aa17.9■□□□□ 0.46
CLK3-227ENST00000570296 FAM72DQ6L9T8 149 aa17.9■□□□□ 0.46
CLK3-227ENST00000570296 IYDQ6PHW0 289 aa17.9■□□□□ 0.46
CLK3-227ENST00000570296 FAM72BQ86X60 149 aa17.9■□□□□ 0.46
CLK3-227ENST00000570296 ADAMTS17Q8TE56 1095 aa17.9■□□□□ 0.46
CLK3-227ENST00000570296 DTD2Q96FN9 168 aa17.9■□□□□ 0.46
CLK3-227ENST00000570296 FAM81BQ96LP2 452 aa17.9■□□□□ 0.46
CLK3-227ENST00000570296 CFAP57Q96MR6 1250 aa17.9■□□□□ 0.46
CLK3-227ENST00000570296 FCRL4Q96PJ5 515 aa17.9■□□□□ 0.46
CLK3-227ENST00000570296 HERPUD2Q9BSE4 406 aa17.9■□□□□ 0.46
CLK3-227ENST00000570296 LATS2Q9NRM7 1088 aa17.9■□□□□ 0.46
CLK3-227ENST00000570296 AGPAT4Q9NRZ5 378 aa17.9■□□□□ 0.46
CLK3-227ENST00000570296 B4GALT6Q9UBX8 382 aa17.9■□□□□ 0.46
CLK3-227ENST00000570296 FER1L5A0AVI2 2057 aa17.9■□□□□ 0.46
CLK3-227ENST00000570296 FAM237AA0A1B0GTK4 181 aa17.89■□□□□ 0.45
CLK3-227ENST00000570296 TRIM49BA6NDI0 452 aa17.89■□□□□ 0.45
CLK3-227ENST00000570296 A8MX80 341 aa17.89■□□□□ 0.45
CLK3-227ENST00000570296 ZNF185O15231 689 aa17.89■□□□□ 0.45
CLK3-227ENST00000570296 TMEM63AO94886 807 aa17.89■□□□□ 0.45
CLK3-227ENST00000570296 KRT9P35527 623 aa17.89■□□□□ 0.45
CLK3-227ENST00000570296 GABRB2P47870 512 aa17.89■□□□□ 0.45
CLK3-227ENST00000570296 SEPHS1P49903 392 aa17.89■□□□□ 0.45
CLK3-227ENST00000570296 PARP15Q460N3 678 aa17.89■□□□□ 0.45
CLK3-227ENST00000570296 VWA5B1Q5TIE3 1220 aa17.89■□□□□ 0.45
CLK3-227ENST00000570296 RAET1GQ6H3X3 334 aa17.89■□□□□ 0.45
CLK3-227ENST00000570296 TRNP1Q6NT89 227 aa17.89■□□□□ 0.45
CLK3-227ENST00000570296 KRBA2Q6ZNG9 492 aa17.89■□□□□ 0.45
CLK3-227ENST00000570296 SRLQ86TD4 932 aa17.89■□□□□ 0.45
CLK3-227ENST00000570296 GALNT13Q8IUC8 556 aa17.89■□□□□ 0.45
CLK3-227ENST00000570296 CBARPQ8N350 705 aaPredicted RBP17.89■□□□□ 0.45
CLK3-227ENST00000570296 PAF1Q8N7H5 531 aa17.89■□□□□ 0.45
CLK3-227ENST00000570296 RTL3Q8N8U3 475 aaKnown RBP17.89■□□□□ 0.45
CLK3-227ENST00000570296 TMEM102Q8N9M5 508 aaPredicted RBP17.89■□□□□ 0.45
CLK3-227ENST00000570296 TBC1D10AQ9BXI6 508 aa17.89■□□□□ 0.45
CLK3-227ENST00000570296 CNOT8Q9UFF9 292 aaKnown RBP17.89■□□□□ 0.45
CLK3-227ENST00000570296 FARSAQ9Y285 508 aaKnown RBP17.89■□□□□ 0.45
CLK3-227ENST00000570296 KIR2DS5A0A0G2JLQ3 304 aa17.88■□□□□ 0.45
CLK3-227ENST00000570296 A0A0G2JNG1 304 aa17.88■□□□□ 0.45
CLK3-227ENST00000570296 KIR2DS3K7RE56 304 aa17.88■□□□□ 0.45
CLK3-227ENST00000570296 CLCN1P35523 988 aa17.88■□□□□ 0.45
CLK3-227ENST00000570296 NDUFA8P51970 172 aa17.88■□□□□ 0.45
CLK3-227ENST00000570296 BCL2L1Q07817 233 aa17.88■□□□□ 0.45
CLK3-227ENST00000570296 KIR2DS5Q14953 304 aa17.88■□□□□ 0.45
CLK3-227ENST00000570296 CNGA3Q16281 694 aa17.88■□□□□ 0.45
CLK3-227ENST00000570296 FOXD4L5Q5VV16 416 aaPredicted RBP17.88■□□□□ 0.45
CLK3-227ENST00000570296 SMYD5Q6GMV2 418 aa17.88■□□□□ 0.45
CLK3-227ENST00000570296 MYO7BQ6PIF6 2116 aa17.88■□□□□ 0.45
CLK3-227ENST00000570296 MED25Q71SY5 747 aa17.88■□□□□ 0.45
CLK3-227ENST00000570296 ARCQ7LC44 396 aa17.88■□□□□ 0.45
CLK3-227ENST00000570296 PRSS42Q7Z5A4 293 aa17.88■□□□□ 0.45
CLK3-227ENST00000570296 LZTR1Q8N653 840 aa17.88■□□□□ 0.45
CLK3-227ENST00000570296 FOXD4L4Q8WXT5 416 aaPredicted RBP17.88■□□□□ 0.45
CLK3-227ENST00000570296 C18orf8Q96DM3 657 aa17.88■□□□□ 0.45
CLK3-227ENST00000570296 ILKAPQ9H0C8 392 aaPredicted RBP17.88■□□□□ 0.45
CLK3-227ENST00000570296 UCK1Q9HA47 277 aa17.88■□□□□ 0.45
CLK3-227ENST00000570296 PDE7BQ9NP56 450 aa17.88■□□□□ 0.45
CLK3-227ENST00000570296 RMND1Q9NWS8 449 aa17.88■□□□□ 0.45
CLK3-227ENST00000570296 OSGIN2Q9Y236 505 aa17.88■□□□□ 0.45
CLK3-227ENST00000570296 GOLGA6CA6NDK9 693 aa17.87■□□□□ 0.45
CLK3-227ENST00000570296 GOLGA6BA6NDN3 693 aa17.87■□□□□ 0.45
CLK3-227ENST00000570296 A6NL46 340 aa17.87■□□□□ 0.45
CLK3-227ENST00000570296 TIAF1O95411 115 aa17.87■□□□□ 0.45
CLK3-227ENST00000570296 GOLGA6DP0CG33 693 aa17.87■□□□□ 0.45
CLK3-227ENST00000570296 HOXB4P17483 251 aaPredicted RBP17.87■□□□□ 0.45
CLK3-227ENST00000570296 ETV3P41162 512 aa17.87■□□□□ 0.45
CLK3-227ENST00000570296 RRADP55042 308 aa17.87■□□□□ 0.45
CLK3-227ENST00000570296 HDAC4P56524 1084 aa17.87■□□□□ 0.45
CLK3-227ENST00000570296 PDE1BQ01064 536 aa17.87■□□□□ 0.45
CLK3-227ENST00000570296 PTK2Q05397 1052 aa17.87■□□□□ 0.45
CLK3-227ENST00000570296 ZNF658Q5TYW1 1059 aaPredicted RBP17.87■□□□□ 0.45
CLK3-227ENST00000570296 LYPLAL1Q5VWZ2 237 aa17.87■□□□□ 0.45
CLK3-227ENST00000570296 FAM199XQ6PEV8 388 aaPredicted RBP17.87■□□□□ 0.45
CLK3-227ENST00000570296 SPOCK2Q92563 424 aa17.87■□□□□ 0.45
CLK3-227ENST00000570296 TGM7Q96PF1 710 aa17.87■□□□□ 0.45
CLK3-227ENST00000570296 AKIRIN1Q9H9L7 192 aaPredicted RBP17.87■□□□□ 0.45
CLK3-227ENST00000570296 PDFQ9HBH1 243 aa17.87■□□□□ 0.45
CLK3-227ENST00000570296 GOLGA6AQ9NYA3 693 aa17.87■□□□□ 0.45
CLK3-227ENST00000570296 OGFRQ9NZT2 677 aa17.87■□□□□ 0.45
CLK3-227ENST00000570296 TBC1D29Q9UFV1 150 aa17.87■□□□□ 0.45
CLK3-227ENST00000570296 TMEM59LQ9UK28 342 aa17.87■□□□□ 0.45
CLK3-227ENST00000570296 NTNG1Q9Y2I2 539 aa17.87■□□□□ 0.45
CLK3-227ENST00000570296 TMEM98Q9Y2Y6 226 aa17.87■□□□□ 0.45
CLK3-227ENST00000570296 PIKFYVEQ9Y2I7 2098 aa17.87■□□□□ 0.45
CLK3-227ENST00000570296 A0A1B0GUH1 482 aa17.86■□□□□ 0.45
CLK3-227ENST00000570296 OR5K4A6NMS3 321 aa17.86■□□□□ 0.45
CLK3-227ENST00000570296 TRAFD1O14545 582 aaPredicted RBP17.86■□□□□ 0.45
CLK3-227ENST00000570296 RASSF9O75901 435 aa17.86■□□□□ 0.45
CLK3-227ENST00000570296 HEXIM1O94992 359 aaKnown RBP17.86■□□□□ 0.45
CLK3-227ENST00000570296 RGRP47804 291 aa17.86■□□□□ 0.45
CLK3-227ENST00000570296 ATP11AP98196 1134 aa17.86■□□□□ 0.45
CLK3-227ENST00000570296 DPTQ07507 201 aa17.86■□□□□ 0.45
CLK3-227ENST00000570296 PWWP2BQ6NUJ5 590 aa17.86■□□□□ 0.45
CLK3-227ENST00000570296 IGFL3Q6UXB1 125 aa17.86■□□□□ 0.45
CLK3-227ENST00000570296 ADAMTSL4Q6UY14 1074 aa17.86■□□□□ 0.45
CLK3-227ENST00000570296 KLHL6Q8WZ60 621 aa17.86■□□□□ 0.45
CLK3-227ENST00000570296 SHC3Q92529 594 aa17.86■□□□□ 0.45
CLK3-227ENST00000570296 CHST11Q9NPF2 352 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms