RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 AGRPO00253 132 aa17.02■□□□□ 0.32
CLN3-216ENST00000565316 CCL4P13236 92 aa17.02■□□□□ 0.32
CLN3-216ENST00000565316 ACTR1BP42025 376 aa17.02■□□□□ 0.32
CLN3-216ENST00000565316 LIMK2P53671 638 aa17.02■□□□□ 0.32
CLN3-216ENST00000565316 UBASH3AP57075 661 aa17.02■□□□□ 0.32
CLN3-216ENST00000565316 ACTR1AP61163 376 aa17.02■□□□□ 0.32
CLN3-216ENST00000565316 RPL26P61254 145 aaKnown RBP17.02■□□□□ 0.32
CLN3-216ENST00000565316 DSC2Q02487 901 aa17.02■□□□□ 0.32
CLN3-216ENST00000565316 LRP8Q14114 963 aa17.02■□□□□ 0.32
CLN3-216ENST00000565316 PDK2Q15119 407 aa17.02■□□□□ 0.32
CLN3-216ENST00000565316 IFI16Q16666 785 aaKnown RBP17.02■□□□□ 0.32
CLN3-216ENST00000565316 CPNE8Q86YQ8 564 aa17.02■□□□□ 0.32
CLN3-216ENST00000565316 EXD1Q8NHP7 514 aa17.02■□□□□ 0.32
CLN3-216ENST00000565316 ZNF564Q8TBZ8 553 aaPredicted RBP17.02■□□□□ 0.32
CLN3-216ENST00000565316 CCDC74BQ96LY2 380 aa17.02■□□□□ 0.32
CLN3-216ENST00000565316 LYSMD1Q96S90 227 aa17.02■□□□□ 0.32
CLN3-216ENST00000565316 AGAP2Q99490 1192 aa17.02■□□□□ 0.32
CLN3-216ENST00000565316 DPYSL5Q9BPU6 564 aa17.02■□□□□ 0.32
CLN3-216ENST00000565316 TDRD1Q9BXT4 1180 aaKnown RBP17.02■□□□□ 0.32
CLN3-216ENST00000565316 RPL26L1Q9UNX3 145 aaKnown RBP17.02■□□□□ 0.32
CLN3-216ENST00000565316 LUC7L2Q9Y383 392 aaKnown RBP17.02■□□□□ 0.32
CLN3-216ENST00000565316 PCDHGA3Q9Y5H0 932 aa17.02■□□□□ 0.32
CLN3-216ENST00000565316 PROSCO94903 275 aa17.01■□□□□ 0.31
CLN3-216ENST00000565316 FGF3P11487 239 aaPredicted RBP17.01■□□□□ 0.31
CLN3-216ENST00000565316 SSR1P43307 286 aaKnown RBP17.01■□□□□ 0.31
CLN3-216ENST00000565316 FASLGP48023 281 aa17.01■□□□□ 0.31
CLN3-216ENST00000565316 EPHB1P54762 984 aa17.01■□□□□ 0.31
CLN3-216ENST00000565316 NIPAL4Q0D2K0 466 aa17.01■□□□□ 0.31
CLN3-216ENST00000565316 NFKBIBQ15653 356 aa17.01■□□□□ 0.31
CLN3-216ENST00000565316 MANEAQ5SRI9 462 aa17.01■□□□□ 0.31
CLN3-216ENST00000565316 TMEM164Q5U3C3 297 aa17.01■□□□□ 0.31
CLN3-216ENST00000565316 TRIM74Q86UV6 250 aa17.01■□□□□ 0.31
CLN3-216ENST00000565316 LUZP1Q86V48 1076 aa17.01■□□□□ 0.31
CLN3-216ENST00000565316 PQLC3Q8N755 202 aa17.01■□□□□ 0.31
CLN3-216ENST00000565316 KCTD6Q8NC69 237 aa17.01■□□□□ 0.31
CLN3-216ENST00000565316 RCBTB1Q8NDN9 531 aa17.01■□□□□ 0.31
CLN3-216ENST00000565316 CPLX3Q8WVH0 158 aa17.01■□□□□ 0.31
CLN3-216ENST00000565316 TAAR9Q96RI9 348 aa17.01■□□□□ 0.31
CLN3-216ENST00000565316 RIOK2Q9BVS4 552 aaKnown RBP17.01■□□□□ 0.31
CLN3-216ENST00000565316 HAUS2Q9NVX0 235 aa17.01■□□□□ 0.31
CLN3-216ENST00000565316 WDR70Q9NW82 654 aa17.01■□□□□ 0.31
CLN3-216ENST00000565316 PDP2Q9P2J9 529 aa17.01■□□□□ 0.31
CLN3-216ENST00000565316 CNOT6Q9ULM6 557 aaKnown RBP17.01■□□□□ 0.31
CLN3-216ENST00000565316 CHKBQ9Y259 395 aa17.01■□□□□ 0.31
CLN3-216ENST00000565316 PCDHB11Q9Y5F2 797 aa17.01■□□□□ 0.31
CLN3-216ENST00000565316 PCDHGA4Q9Y5G9 962 aa17.01■□□□□ 0.31
CLN3-216ENST00000565316 CLDN7O95471 211 aa17■□□□□ 0.31
CLN3-216ENST00000565316 GYPCP04921 128 aa17■□□□□ 0.31
CLN3-216ENST00000565316 THRAP10827 490 aa17■□□□□ 0.31
CLN3-216ENST00000565316 CA4P22748 312 aa17■□□□□ 0.31
CLN3-216ENST00000565316 HNRNPH3P31942 346 aaKnown RBP17■□□□□ 0.31
CLN3-216ENST00000565316 CSF2RBP32927 897 aa17■□□□□ 0.31
CLN3-216ENST00000565316 ARSDP51689 593 aa17■□□□□ 0.31
CLN3-216ENST00000565316 TPM4P67936 248 aa17■□□□□ 0.31
CLN3-216ENST00000565316 GPLD1P80108 840 aa17■□□□□ 0.31
CLN3-216ENST00000565316 GBE1Q04446 702 aa17■□□□□ 0.31
CLN3-216ENST00000565316 BIRC2Q13490 618 aa17■□□□□ 0.31
CLN3-216ENST00000565316 NKAIN2Q5VXU1 208 aa17■□□□□ 0.31
CLN3-216ENST00000565316 VASH2Q86V25 355 aa17■□□□□ 0.31
CLN3-216ENST00000565316 GALNT13Q8IUC8 556 aa17■□□□□ 0.31
CLN3-216ENST00000565316 MAP7D3Q8IWC1 876 aa17■□□□□ 0.31
CLN3-216ENST00000565316 SFRP1Q8N474 314 aa17■□□□□ 0.31
CLN3-216ENST00000565316 WDR24Q96S15 920 aa17■□□□□ 0.31
CLN3-216ENST00000565316 PCDH9Q9HC56 1237 aa17■□□□□ 0.31
CLN3-216ENST00000565316 KCNK4Q9NYG8 393 aa17■□□□□ 0.31
CLN3-216ENST00000565316 VPS18Q9P253 973 aa17■□□□□ 0.31
CLN3-216ENST00000565316 UVRAGQ9P2Y5 699 aa17■□□□□ 0.31
CLN3-216ENST00000565316 RGSL1A5PLK6 1076 aa16.99■□□□□ 0.31
CLN3-216ENST00000565316 DNAJC6O75061 913 aa16.99■□□□□ 0.31
CLN3-216ENST00000565316 MAP3K6O95382 1288 aa16.99■□□□□ 0.31
CLN3-216ENST00000565316 HLA-DQB2P05538 268 aa16.99■□□□□ 0.31
CLN3-216ENST00000565316 KRT7P08729 469 aa16.99■□□□□ 0.31
CLN3-216ENST00000565316 WT1P19544 449 aaPredicted RBP16.99■□□□□ 0.31
CLN3-216ENST00000565316 MX2P20592 715 aa16.99■□□□□ 0.31
CLN3-216ENST00000565316 TAS2R40P59535 323 aa16.99■□□□□ 0.31
CLN3-216ENST00000565316 SLC10A2Q12908 348 aaPredicted RBP16.99■□□□□ 0.31
CLN3-216ENST00000565316 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.99■□□□□ 0.31
CLN3-216ENST00000565316 TMEM71Q6P5X7 295 aa16.99■□□□□ 0.31
CLN3-216ENST00000565316 MARK2Q7KZI7 788 aaKnown RBP16.99■□□□□ 0.31
CLN3-216ENST00000565316 AGBL5Q8NDL9 886 aa16.99■□□□□ 0.31
CLN3-216ENST00000565316 EXTL1Q92935 676 aa16.99■□□□□ 0.31
CLN3-216ENST00000565316 HDAC11Q96DB2 347 aa16.99■□□□□ 0.31
CLN3-216ENST00000565316 CTTNBP2NLQ9P2B4 639 aa16.99■□□□□ 0.31
CLN3-216ENST00000565316 LCMT1Q9UIC8 334 aa16.99■□□□□ 0.31
CLN3-216ENST00000565316 PCYT1BQ9Y5K3 369 aaPredicted RBP16.99■□□□□ 0.31
CLN3-216ENST00000565316 UBR5O95071 2799 aaPredicted RBP16.99■□□□□ 0.31
CLN3-216ENST00000565316 SYCE3A1L190 88 aa16.98■□□□□ 0.31
CLN3-216ENST00000565316 B4E171 279 aa16.98■□□□□ 0.31
CLN3-216ENST00000565316 STMND1H3BQB6 276 aa16.98■□□□□ 0.31
CLN3-216ENST00000565316 EML2O95834 649 aa16.98■□□□□ 0.31
CLN3-216ENST00000565316 MMP2P08253 660 aa16.98■□□□□ 0.31
CLN3-216ENST00000565316 TSPAN7P41732 249 aa16.98■□□□□ 0.31
CLN3-216ENST00000565316 SPINT3P49223 89 aa16.98■□□□□ 0.31
CLN3-216ENST00000565316 QPCTQ16769 361 aa16.98■□□□□ 0.31
CLN3-216ENST00000565316 HENMT1Q5T8I9 393 aaKnown RBP16.98■□□□□ 0.31
CLN3-216ENST00000565316 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.98■□□□□ 0.31
CLN3-216ENST00000565316 ZSCAN1Q8NBB4 408 aa16.98■□□□□ 0.31
CLN3-216ENST00000565316 LPCAT1Q8NF37 534 aa16.98■□□□□ 0.31
CLN3-216ENST00000565316 SLC37A2Q8TED4 501 aa16.98■□□□□ 0.31
CLN3-216ENST00000565316 PMEPA1Q969W9 287 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms