RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 RRP8O43159 456 aaKnown RBP14.78□□□□□ -0.04
CLN3-213ENST00000565047 PYGLP06737 847 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 CA4P22748 312 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 PTPN3P26045 913 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 ZNF75DP51815 510 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 MAZP56270 477 aaKnown RBP14.78□□□□□ -0.04
CLN3-213ENST00000565047 DYNLT1P63172 113 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 SPOCD1Q6ZMY3 1216 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 NT5DC3Q86UY8 548 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 RFX6Q8HWS3 928 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 KATNAL2Q8IYT4 538 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 ARL14Q8N4G2 192 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 ZNF248Q8NDW4 579 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 SPATA22Q8NHS9 363 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 WDR36Q8NI36 951 aaKnown RBP14.78□□□□□ -0.04
CLN3-213ENST00000565047 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.78□□□□□ -0.04
CLN3-213ENST00000565047 ZDHHC1Q8WTX9 485 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 PATE1Q8WXA2 126 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 MRFAP1L1Q96HT8 127 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 TEKT5Q96M29 485 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 AGAP3Q96P47 875 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 PANX2Q96RD6 677 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 GFM1Q96RP9 751 aaKnown RBP14.78□□□□□ -0.04
CLN3-213ENST00000565047 GSDMCQ9BYG8 508 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 MOSPD1Q9UJG1 213 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 REXO2Q9Y3B8 237 aaKnown RBP14.78□□□□□ -0.04
CLN3-213ENST00000565047 KIF26BQ2KJY2 2108 aa14.78□□□□□ -0.04
CLN3-213ENST00000565047 PTPRQQ9UMZ3 2332 aa14.77□□□□□ -0.04
CLN3-213ENST00000565047 hCG_1818297A0A087WSY0 165 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 CCDC187A0A096LP49 1063 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 C1orf232A0A0U1RR37 186 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 PPP1R12AO14974 1030 aaPredicted RBP14.77□□□□□ -0.05
CLN3-213ENST00000565047 SPOPO43791 374 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 CST8O60676 142 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 ECEL1O95672 775 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 MT-CYBP00156 380 aaPredicted RBP14.77□□□□□ -0.05
CLN3-213ENST00000565047 MLLT3P42568 568 aaPredicted RBP14.77□□□□□ -0.05
CLN3-213ENST00000565047 PCBP4P57723 403 aaKnown RBP14.77□□□□□ -0.05
CLN3-213ENST00000565047 CCDC173Q0VFZ6 552 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 ILF3Q12906 894 aaKnown RBP eCLIP14.77□□□□□ -0.05
CLN3-213ENST00000565047 SQSTM1Q13501 440 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 GALNT3Q14435 633 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 C11orf63Q6NUN7 778 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 LRRC69Q6ZNQ3 347 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 LYSMD3Q7Z3D4 306 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 TMC3Q7Z5M5 1100 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 GAS2L3Q86XJ1 694 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 SLITRK4Q8IW52 837 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 Q8N9G6 341 aaPredicted RBP14.77□□□□□ -0.05
CLN3-213ENST00000565047 KIAA1524Q8TCG1 905 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 KRT35Q92764 455 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 HERPUD2Q9BSE4 406 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 ADGRE3Q9BY15 652 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 FOXP3Q9BZS1 431 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 FAM83DQ9H4H8 585 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 GLOD4Q9HC38 313 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 MAGEE1Q9HCI5 957 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 THSD1Q9NS62 852 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 VPS18Q9P253 973 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 ATXN7L1Q9ULK2 861 aaPredicted RBP14.77□□□□□ -0.05
CLN3-213ENST00000565047 ADGRG1Q9Y653 693 aa14.77□□□□□ -0.05
CLN3-213ENST00000565047 MGAQ8IWI9 3026 aa14.76□□□□□ -0.05
CLN3-213ENST00000565047 LOC285095A0A1B0GVY8 99 aa14.76□□□□□ -0.05
CLN3-213ENST00000565047 GOLGA6CA6NDK9 693 aa14.76□□□□□ -0.05
CLN3-213ENST00000565047 GOLGA6BA6NDN3 693 aa14.76□□□□□ -0.05
CLN3-213ENST00000565047 PPM1DO15297 605 aa14.76□□□□□ -0.05
CLN3-213ENST00000565047 INPP4BO15327 924 aa14.76□□□□□ -0.05
CLN3-213ENST00000565047 EML2O95834 649 aa14.76□□□□□ -0.05
CLN3-213ENST00000565047 GOLGA6DP0CG33 693 aa14.76□□□□□ -0.05
CLN3-213ENST00000565047 TNNT1P13805 278 aa14.76□□□□□ -0.05
CLN3-213ENST00000565047 INHBCP55103 352 aa14.76□□□□□ -0.05
CLN3-213ENST00000565047 CDK18Q07002 472 aa14.76□□□□□ -0.05
CLN3-213ENST00000565047 LLGL1Q15334 1064 aa14.76□□□□□ -0.05
CLN3-213ENST00000565047 TFDP3Q5H9I0 405 aa14.76□□□□□ -0.05
CLN3-213ENST00000565047 DOK6Q6PKX4 331 aa14.76□□□□□ -0.05
CLN3-213ENST00000565047 SLC30A9Q6PML9 568 aa14.76□□□□□ -0.05
CLN3-213ENST00000565047 KDELC1Q6UW63 502 aa14.76□□□□□ -0.05
CLN3-213ENST00000565047 ZNF574Q6ZN55 896 aaPredicted RBP14.76□□□□□ -0.05
CLN3-213ENST00000565047 RCOR2Q8IZ40 523 aa14.76□□□□□ -0.05
CLN3-213ENST00000565047 GPR26Q8NDV2 337 aa14.76□□□□□ -0.05
CLN3-213ENST00000565047 OR2M4Q96R27 311 aa14.76□□□□□ -0.05
CLN3-213ENST00000565047 SUDS3Q9H7L9 328 aaPredicted RBP14.76□□□□□ -0.05
CLN3-213ENST00000565047 ZFYVE1Q9HBF4 777 aa14.76□□□□□ -0.05
CLN3-213ENST00000565047 GOLGA6AQ9NYA3 693 aa14.76□□□□□ -0.05
CLN3-213ENST00000565047 NFKBIL1Q9UBC1 381 aaPredicted RBP14.76□□□□□ -0.05
CLN3-213ENST00000565047 EPN1Q9Y6I3 576 aaPredicted RBP14.76□□□□□ -0.05
CLN3-213ENST00000565047 DUSP10Q9Y6W6 482 aa14.76□□□□□ -0.05
CLN3-213ENST00000565047 A6NCN8 305 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 SOWAHDA6NJG2 315 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 PLD2O14939 933 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 TNFSF15O95150 251 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 ZRANB2O95218 330 aaKnown RBP eCLIP14.75□□□□□ -0.05
CLN3-213ENST00000565047 NDUFA10O95299 355 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 ATP1A1P05023 1023 aaKnown RBP14.75□□□□□ -0.05
CLN3-213ENST00000565047 ITGA2BP08514 1039 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 PIRTP0C851 137 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 CD1CP29017 333 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 UGT1A5P35504 534 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 OR1D5P58170 312 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 DCDC1P59894 354 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms