RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 MAP3K6O95382 1288 aa16.76■□□□□ 0.27
CLN3-211ENST00000564091 ASMTLO95671 621 aa16.76■□□□□ 0.27
CLN3-211ENST00000564091 TRBC1P01850 177 aa16.76■□□□□ 0.27
CLN3-211ENST00000564091 SFTPCP11686 197 aa16.76■□□□□ 0.27
CLN3-211ENST00000564091 ATP1A2P50993 1020 aa16.76■□□□□ 0.27
CLN3-211ENST00000564091 DSC2Q02487 901 aa16.76■□□□□ 0.27
CLN3-211ENST00000564091 SQSTM1Q13501 440 aa16.76■□□□□ 0.27
CLN3-211ENST00000564091 TMEM71Q6P5X7 295 aa16.76■□□□□ 0.27
CLN3-211ENST00000564091 FAM129CQ86XR2 697 aa16.76■□□□□ 0.27
CLN3-211ENST00000564091 GALNT13Q8IUC8 556 aa16.76■□□□□ 0.27
CLN3-211ENST00000564091 NDUFAF2Q8N183 169 aa16.76■□□□□ 0.27
CLN3-211ENST00000564091 IL22RA1Q8N6P7 574 aa16.76■□□□□ 0.27
CLN3-211ENST00000564091 SLC37A2Q8TED4 501 aa16.76■□□□□ 0.27
CLN3-211ENST00000564091 LRRN4Q8WUT4 740 aa16.76■□□□□ 0.27
CLN3-211ENST00000564091 TEKT4Q8WW24 435 aa16.76■□□□□ 0.27
CLN3-211ENST00000564091 SLC38A3Q99624 504 aa16.76■□□□□ 0.27
CLN3-211ENST00000564091 POLR1EQ9GZS1 481 aaKnown RBP16.76■□□□□ 0.27
CLN3-211ENST00000564091 ZMYND15Q9H091 742 aa16.76■□□□□ 0.27
CLN3-211ENST00000564091 THAP2Q9H0W7 228 aa16.76■□□□□ 0.27
CLN3-211ENST00000564091 CHKBQ9Y259 395 aa16.76■□□□□ 0.27
CLN3-211ENST00000564091 TTLL3Q9Y4R7 772 aa16.76■□□□□ 0.27
CLN3-211ENST00000564091 LRP4O75096 1905 aa16.76■□□□□ 0.27
CLN3-211ENST00000564091 COL12A1Q99715 3063 aa16.75■□□□□ 0.27
CLN3-211ENST00000564091 A0A1B0GTH6 734 aa16.75■□□□□ 0.27
CLN3-211ENST00000564091 EFCAB7A8K855 629 aa16.75■□□□□ 0.27
CLN3-211ENST00000564091 A8MU76 341 aa16.75■□□□□ 0.27
CLN3-211ENST00000564091 MFSD11O43934 449 aa16.75■□□□□ 0.27
CLN3-211ENST00000564091 LIFP15018 202 aa16.75■□□□□ 0.27
CLN3-211ENST00000564091 SSR1P43307 286 aaKnown RBP16.75■□□□□ 0.27
CLN3-211ENST00000564091 STC1P52823 247 aa16.75■□□□□ 0.27
CLN3-211ENST00000564091 EPHB1P54762 984 aa16.75■□□□□ 0.27
CLN3-211ENST00000564091 TDRD12Q587J7 1177 aaKnown RBP16.75■□□□□ 0.27
CLN3-211ENST00000564091 SNAP47Q5SQN1 464 aa16.75■□□□□ 0.27
CLN3-211ENST00000564091 ANKS6Q68DC2 871 aa16.75■□□□□ 0.27
CLN3-211ENST00000564091 NLRP8Q86W28 1048 aa16.75■□□□□ 0.27
CLN3-211ENST00000564091 NRSN1Q8IZ57 195 aa16.75■□□□□ 0.27
CLN3-211ENST00000564091 CACNA2D3Q8IZS8 1091 aa16.75■□□□□ 0.27
CLN3-211ENST00000564091 CCDC112Q8NEF3 446 aa16.75■□□□□ 0.27
CLN3-211ENST00000564091 AHCYL2Q96HN2 611 aaKnown RBP16.75■□□□□ 0.27
CLN3-211ENST00000564091 COX14Q96I36 57 aa16.75■□□□□ 0.27
CLN3-211ENST00000564091 DDA1Q9BW61 102 aa16.75■□□□□ 0.27
CLN3-211ENST00000564091 SLC25A18Q9H1K4 315 aa16.75■□□□□ 0.27
CLN3-211ENST00000564091 RBM22Q9NW64 420 aaKnown RBP eCLIP16.75■□□□□ 0.27
CLN3-211ENST00000564091 GEMIN8Q9NWZ8 242 aaKnown RBP16.75■□□□□ 0.27
CLN3-211ENST00000564091 ZNHIT2Q9UHR6 403 aa16.75■□□□□ 0.27
CLN3-211ENST00000564091 ANAPC7Q9UJX3 599 aa16.75■□□□□ 0.27
CLN3-211ENST00000564091 SMTNL1A8MU46 457 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 GOLGA6L22H0YM25 854 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 RAD1O60671 282 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 PPFIA2O75334 1257 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 CLDN7O95471 211 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 ATP1A1P05023 1023 aaKnown RBP16.74■□□□□ 0.27
CLN3-211ENST00000564091 GARSP41250 739 aaKnown RBP16.74■□□□□ 0.27
CLN3-211ENST00000564091 FASLGP48023 281 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 GPLD1P80108 840 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 NFATC2Q13469 925 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 ATP13A4Q4VNC1 1196 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 CCDC122Q5T0U0 273 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 HGSNATQ68CP4 663 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 ZNF765Q7L2R6 523 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 CPNE8Q86YQ8 564 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 SFRP1Q8N474 314 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 NIPA2Q8N8Q9 360 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 EXD1Q8NHP7 514 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 MAML1Q92585 1016 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 DPYSL5Q9BPU6 564 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 BPIFA3Q9BQP9 254 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 NUP85Q9BW27 656 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 ASPSCR1Q9BZE9 553 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 TMEM63CQ9P1W3 806 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 IP6K2Q9UHH9 426 aa16.74■□□□□ 0.27
CLN3-211ENST00000564091 CNOT6Q9ULM6 557 aaKnown RBP16.74■□□□□ 0.27
CLN3-211ENST00000564091 OAS3Q9Y6K5 1087 aaKnown RBP16.74■□□□□ 0.27
CLN3-211ENST00000564091 B4E171 279 aa16.73■□□□□ 0.27
CLN3-211ENST00000564091 DNAJC6O75061 913 aa16.73■□□□□ 0.27
CLN3-211ENST00000564091 PRLP01236 227 aa16.73■□□□□ 0.27
CLN3-211ENST00000564091 ZNF30P17039 623 aa16.73■□□□□ 0.27
CLN3-211ENST00000564091 TSPAN7P41732 249 aa16.73■□□□□ 0.27
CLN3-211ENST00000564091 NIPAL4Q0D2K0 466 aa16.73■□□□□ 0.27
CLN3-211ENST00000564091 GALNT2Q10471 571 aa16.73■□□□□ 0.27
CLN3-211ENST00000564091 LRP8Q14114 963 aa16.73■□□□□ 0.27
CLN3-211ENST00000564091 NR1I3Q14994 352 aa16.73■□□□□ 0.27
CLN3-211ENST00000564091 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.73■□□□□ 0.27
CLN3-211ENST00000564091 DCAF12Q5T6F0 453 aa16.73■□□□□ 0.27
CLN3-211ENST00000564091 NCBP2-AS2Q69YL0 99 aa16.73■□□□□ 0.27
CLN3-211ENST00000564091 BORAQ6PGQ7 559 aa16.73■□□□□ 0.27
CLN3-211ENST00000564091 CHST15Q7LFX5 561 aaPredicted RBP16.73■□□□□ 0.27
CLN3-211ENST00000564091 PTRH1Q86Y79 214 aaKnown RBP16.73■□□□□ 0.27
CLN3-211ENST00000564091 LRRC49Q8IUZ0 686 aa16.73■□□□□ 0.27
CLN3-211ENST00000564091 BMPERQ8N8U9 685 aa16.73■□□□□ 0.27
CLN3-211ENST00000564091 LPCAT1Q8NF37 534 aa16.73■□□□□ 0.27
CLN3-211ENST00000564091 OR10G6Q8NH81 332 aa16.73■□□□□ 0.27
CLN3-211ENST00000564091 ARRDC2Q8TBH0 407 aa16.73■□□□□ 0.27
CLN3-211ENST00000564091 WDR24Q96S15 920 aa16.73■□□□□ 0.27
CLN3-211ENST00000564091 CTRCQ99895 268 aa16.73■□□□□ 0.27
CLN3-211ENST00000564091 TDRD1Q9BXT4 1180 aaKnown RBP16.73■□□□□ 0.27
CLN3-211ENST00000564091 PDP2Q9P2J9 529 aa16.73■□□□□ 0.27
CLN3-211ENST00000564091 TBC1D29Q9UFV1 150 aa16.73■□□□□ 0.27
CLN3-211ENST00000564091 KCNK6Q9Y257 313 aa16.73■□□□□ 0.27
CLN3-211ENST00000564091 NAV2Q8IVL1 2488 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms