RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	RAD23B	P54727	409 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	ARL4C	P56559	192 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	GEMIN4	P57678	1058 aa	Known RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	NLRP11	P59045	1033 aa	Known RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	GPX6	P59796	221 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	RPS6	P62753	249 aa	Known RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	HOXA4	Q00056	320 aa	Predicted RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	CDK16	Q00536	496 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	SATB1	Q01826	763 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	PRKCE	Q02156	737 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	OGDH	Q02218	1023 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	SLC18A2	Q05940	514 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	PIGH	Q14442	188 aa	Predicted RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	KCNJ11	Q14654	390 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	EMC2	Q15006	297 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	EFTUD2	Q15029	972 aa	Known RBP eCLIP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	PDCD1	Q15116	288 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	DLGAP5	Q15398	846 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	TAF11	Q15544	211 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	TRIP13	Q15645	432 aa	Predicted RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	SLC1A5	Q15758	541 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	TBCC	Q15814	346 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	TFDP3	Q5H9I0	405 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	FAM102B	Q5T8I3	360 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	DAB2IP	Q5VWQ8	1189 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	CAPRIN2	Q6IMN6	1127 aa	Known RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	ANO7	Q6IWH7	933 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	IRGC	Q6NXR0	463 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	LVRN	Q6Q4G3	990 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	MFSD7	Q6UXD7	560 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	C4orf50	Q6ZRC1	276 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	C9orf47	Q6ZRZ4	202 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	SEPT14	Q6ZU15	432 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	SH2D5	Q6ZV89	423 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	CENPU	Q71F23	418 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	PCGF5	Q86SE9	256 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	PRUNE1	Q86TP1	453 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	VSIG1	Q86XK7	387 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	CCDC60	Q8IWA6	550 aa	Predicted RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	BRSK2	Q8IWQ3	736 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	ADHFE1	Q8IWW8	467 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	RCOR2	Q8IZ40	523 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	CFAP52	Q8N1V2	620 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	NAT8L	Q8N9F0	302 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	BANP	Q8N9N5	519 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	RAB3IL1	Q8TBN0	382 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	LRRC8C	Q8TDW0	803 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	DCAKD	Q8WVC6	231 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	POMGNT1	Q8WZA1	660 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	CPT1B	Q92523	772 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	HOXB13	Q92826	284 aa	Predicted RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	APBB2	Q92870	758 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	CCDC127	Q96BQ5	260 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	RTP4	Q96DX8	246 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	THOC1	Q96FV9	657 aa	Known RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	APOPT1	Q96IL0	206 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	ZNF333	Q96JL9	665 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	PRMT6	Q96LA8	375 aa	Predicted RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	C12orf42	Q96LP6	360 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	C9orf72	Q96LT7	481 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	SMC6	Q96SB8	1091 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	PAFAH2	Q99487	392 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	PI4K2A	Q9BTU6	479 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	CCDC28B	Q9BUN5	200 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	KIFC3	Q9BVG8	833 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	TBC1D10A	Q9BXI6	508 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	MAK16	Q9BXY0	300 aa	Known RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	PITPNM3	Q9BZ71	974 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	GLIS2	Q9BZE0	524 aa	Predicted RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	ZNF518B	Q9C0D4	1074 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	C11orf54	Q9H0W9	315 aa	Predicted RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	POLR3F	Q9H1D9	316 aa	Predicted RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	DHX33	Q9H6R0	707 aa	Known RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	DCLRE1B	Q9H816	532 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	KIF9	Q9HAQ2	790 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	IFT122	Q9HBG6	1241 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	SLC38A10	Q9HBR0	1119 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	APOBEC3G	Q9HC16	384 aa	Known RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	MLXIPL	Q9NP71	852 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	PNPLA8	Q9NP80	782 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	EMC7	Q9NPA0	242 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	KCNK9	Q9NPC2	374 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	SLCO1B3	Q9NPD5	702 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	PARVA	Q9NVD7	372 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	NMRK1	Q9NWW6	199 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	NKX1-2	Q9UD57	310 aa	Predicted RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	TBK1	Q9UHD2	729 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	IP6K2	Q9UHH9	426 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	TCEAL9	Q9UHQ7	104 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	SCOC	Q9UIL1	159 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	ZNF180	Q9UJW8	692 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	TRPC5	Q9UL62	973 aa	Predicted RBP	2.53	□□□□□ -2
SPG11-223	ENST00000560858	DNPEP	Q9ULA0	475 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	STK38L	Q9Y2H1	464 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	LRCH1	Q9Y2L9	728 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	TTLL3	Q9Y4R7	772 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	ASB3	Q9Y575	518 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	PCDHA10	Q9Y5I2	948 aa		2.53	□□□□□ -2
SPG11-223	ENST00000560858	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	2.53	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms