RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 NKAIN2Q5VXU1 208 aa17.63■□□□□ 0.41
HDDC3-205ENST00000559898 IGF2-ASQ6U949 168 aa17.63■□□□□ 0.41
HDDC3-205ENST00000559898 ZNF574Q6ZN55 896 aaPredicted RBP17.63■□□□□ 0.41
HDDC3-205ENST00000559898 ZNF761Q86XN6 746 aaPredicted RBP17.63■□□□□ 0.41
HDDC3-205ENST00000559898 LSMEM2Q8N112 164 aa17.63■□□□□ 0.41
HDDC3-205ENST00000559898 KCNE4Q8WWG9 221 aa17.63■□□□□ 0.41
HDDC3-205ENST00000559898 LIN37Q96GY3 246 aaPredicted RBP17.63■□□□□ 0.41
HDDC3-205ENST00000559898 NUDT22Q9BRQ3 303 aa17.63■□□□□ 0.41
HDDC3-205ENST00000559898 GSDMCQ9BYG8 508 aa17.63■□□□□ 0.41
HDDC3-205ENST00000559898 TRNAU1APQ9NX07 287 aaKnown RBP17.63■□□□□ 0.41
HDDC3-205ENST00000559898 UBP1Q9NZI7 540 aa17.63■□□□□ 0.41
HDDC3-205ENST00000559898 RCCD1A6NED2 376 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 ANKRD66B4E2M5 251 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 PDE2AO00408 941 aaPredicted RBP17.62■□□□□ 0.41
HDDC3-205ENST00000559898 DNAJC6O75061 913 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 C1QL1O75973 258 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 ZNF30P17039 623 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 RBMS1P29558 406 aaKnown RBP17.62■□□□□ 0.41
HDDC3-205ENST00000559898 ACTR1BP42025 376 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 CDKN2BP42772 138 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 SPINT3P49223 89 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 ACTR1AP61163 376 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 ZFP36L1Q07352 338 aaKnown RBP17.62■□□□□ 0.41
HDDC3-205ENST00000559898 ILF3Q12906 894 aaKnown RBP eCLIP17.62■□□□□ 0.41
HDDC3-205ENST00000559898 C16orf72Q14CZ0 275 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 TGIF1Q15583 401 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 TSR1Q2NL82 804 aaKnown RBP17.62■□□□□ 0.41
HDDC3-205ENST00000559898 ARHGAP40Q5TG30 622 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 KAZNQ674X7 775 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 USP53Q70EK8 1073 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 ZNF765Q7L2R6 523 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 RAB11FIP2Q7L804 512 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 CLEC14AQ86T13 490 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 SLITRK4Q8IW52 837 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 RHOT2Q8IXI1 618 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 FBXO39Q8N4B4 442 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 TADA1Q96BN2 335 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 IMP4Q96G21 291 aaKnown RBP17.62■□□□□ 0.41
HDDC3-205ENST00000559898 OR2M4Q96R27 311 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 LYSMD1Q96S90 227 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 HERPUD2Q9BSE4 406 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 C10orf88Q9H8K7 445 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 THSD1Q9NS62 852 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 TMEM9Q9P0T7 183 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 AMACRQ9UHK6 382 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 SHOC2Q9UQ13 582 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 SPO11Q9Y5K1 396 aa17.62■□□□□ 0.41
HDDC3-205ENST00000559898 PLD2O14939 933 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 AURKAO14965 403 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 EFSO43281 561 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 NUDT21O43809 227 aaKnown RBP17.61■□□□□ 0.41
HDDC3-205ENST00000559898 SLC4A1P02730 911 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 TPM1P09493 284 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 CES1P23141 567 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 MPSTP25325 297 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 PTPN3P26045 913 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 ALDH4A1P30038 563 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 SLC5A2P31639 672 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 CD68P34810 354 aaPredicted RBP17.61■□□□□ 0.41
HDDC3-205ENST00000559898 CLN3Q13286 438 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 TCEAL1Q15170 157 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 TAZQ16635 292 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 HENMT1Q5T8I9 393 aaKnown RBP17.61■□□□□ 0.41
HDDC3-205ENST00000559898 ALS2CLQ60I27 953 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 ZNF438Q7Z4V0 828 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 RHOT1Q8IXI2 618 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 RCBTB1Q8NDN9 531 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 GPR26Q8NDV2 337 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 WDR48Q8TAF3 677 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.61■□□□□ 0.41
HDDC3-205ENST00000559898 KRT35Q92764 455 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 PMEPA1Q969W9 287 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 HAUS1Q96CS2 278 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 MLPHQ9BV36 600 aaPredicted RBP17.61■□□□□ 0.41
HDDC3-205ENST00000559898 KCTD5Q9NXV2 234 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 PISDQ9UG56 409 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 SSUH2Q9Y2M2 353 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 LOXL2Q9Y4K0 774 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 ALG6Q9Y672 507 aa17.61■□□□□ 0.41
HDDC3-205ENST00000559898 ZNF487B1APH4 448 aa17.6■□□□□ 0.41
HDDC3-205ENST00000559898 SPOPO43791 374 aa17.6■□□□□ 0.41
HDDC3-205ENST00000559898 ASMTLO95671 621 aa17.6■□□□□ 0.41
HDDC3-205ENST00000559898 PNLIPP16233 465 aa17.6■□□□□ 0.41
HDDC3-205ENST00000559898 NFKBIAP25963 317 aa17.6■□□□□ 0.41
HDDC3-205ENST00000559898 CD1CP29017 333 aa17.6■□□□□ 0.41
HDDC3-205ENST00000559898 CCKBRP32239 447 aa17.6■□□□□ 0.41
HDDC3-205ENST00000559898 CSF2RBP32927 897 aa17.6■□□□□ 0.41
HDDC3-205ENST00000559898 MAGEA1P43355 309 aa17.6■□□□□ 0.41
HDDC3-205ENST00000559898 LRRC38Q5VT99 294 aa17.6■□□□□ 0.41
HDDC3-205ENST00000559898 SARM1Q6SZW1 724 aa17.6■□□□□ 0.41
HDDC3-205ENST00000559898 SPOCD1Q6ZMY3 1216 aa17.6■□□□□ 0.41
HDDC3-205ENST00000559898 NLRP8Q86W28 1048 aa17.6■□□□□ 0.41
HDDC3-205ENST00000559898 CNGA4Q8IV77 575 aa17.6■□□□□ 0.41
HDDC3-205ENST00000559898 NRSN1Q8IZ57 195 aa17.6■□□□□ 0.41
HDDC3-205ENST00000559898 NDUFAF2Q8N183 169 aa17.6■□□□□ 0.41
HDDC3-205ENST00000559898 OR6C4Q8NGE1 309 aa17.6■□□□□ 0.41
HDDC3-205ENST00000559898 ZNF830Q96NB3 372 aaPredicted RBP17.6■□□□□ 0.41
HDDC3-205ENST00000559898 MAK16Q9BXY0 300 aaKnown RBP17.6■□□□□ 0.41
HDDC3-205ENST00000559898 TRIM5Q9C035 493 aa17.6■□□□□ 0.41
HDDC3-205ENST00000559898 RBSNQ9H1K0 784 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms