RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 NIPA2Q8N8Q9 360 aa13.03□□□□□ -0.32
TPM1-220ENST00000559556 NSMCE1Q8WV22 266 aa13.03□□□□□ -0.32
TPM1-220ENST00000559556 JPH3Q8WXH2 748 aaPredicted RBP13.03□□□□□ -0.32
TPM1-220ENST00000559556 HSPH1Q92598 858 aa13.03□□□□□ -0.32
TPM1-220ENST00000559556 ART4Q93070 314 aa13.03□□□□□ -0.32
TPM1-220ENST00000559556 AP2M1Q96CW1 435 aa13.03□□□□□ -0.32
TPM1-220ENST00000559556 COX14Q96I36 57 aa13.03□□□□□ -0.32
TPM1-220ENST00000559556 GEMIN8Q9NWZ8 242 aaKnown RBP13.03□□□□□ -0.32
TPM1-220ENST00000559556 KCNK4Q9NYG8 393 aa13.03□□□□□ -0.32
TPM1-220ENST00000559556 B3GALT1Q9Y5Z6 326 aa13.03□□□□□ -0.32
TPM1-220ENST00000559556 NUP210LQ5VU65 1888 aa13.03□□□□□ -0.32
TPM1-220ENST00000559556 A0A0J9YYE9 177 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 A0A0U1RQS6 177 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 B4E171 279 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 TRBC1P01850 177 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 PYGLP06737 847 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 PDHA1P08559 390 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 RARAP10276 462 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 LIFP15018 202 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 CTPS1P17812 591 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 CSTF2P33240 577 aaKnown RBP eCLIP13.02□□□□□ -0.33
TPM1-220ENST00000559556 TSPAN7P41732 249 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 RAB15P59190 212 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 SLC25A11Q02978 314 aaKnown RBP13.02□□□□□ -0.33
TPM1-220ENST00000559556 KLHL30Q0D2K2 578 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 LRP8Q14114 963 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.02□□□□□ -0.33
TPM1-220ENST00000559556 NKAIN2Q5VXU1 208 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 TXNRD3NBQ6F5E7 133 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 TMEM71Q6P5X7 295 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 BORAQ6PGQ7 559 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 RFLNAQ6ZTI6 216 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 TRIM74Q86UV6 250 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 LRRC49Q8IUZ0 686 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 SFRP1Q8N474 314 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 IL22RA1Q8N6P7 574 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 BMPERQ8N8U9 685 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 SLC37A2Q8TED4 501 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 SCAMP4Q969E2 229 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 ASPSCR1Q9BZE9 553 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 SLC25A18Q9H1K4 315 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 PCDH18Q9HCL0 1135 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 NT5MQ9NPB1 228 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 TMEM9Q9P0T7 183 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 PDP2Q9P2J9 529 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 RCOR3Q9P2K3 495 aaPredicted RBP13.02□□□□□ -0.33
TPM1-220ENST00000559556 MYO1AQ9UBC5 1043 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 CD84Q9UIB8 345 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 PLEKHM1Q9Y4G2 1056 aa13.02□□□□□ -0.33
TPM1-220ENST00000559556 DUX1O43812 170 aa13.01□□□□□ -0.33
TPM1-220ENST00000559556 STC1P52823 247 aa13.01□□□□□ -0.33
TPM1-220ENST00000559556 PTSQ03393 145 aa13.01□□□□□ -0.33
TPM1-220ENST00000559556 TYRO3Q06418 890 aa13.01□□□□□ -0.33
TPM1-220ENST00000559556 PIGHQ14442 188 aaPredicted RBP13.01□□□□□ -0.33
TPM1-220ENST00000559556 CCDC183Q5T5S1 534 aa13.01□□□□□ -0.33
TPM1-220ENST00000559556 GALNT13Q8IUC8 556 aa13.01□□□□□ -0.33
TPM1-220ENST00000559556 RAVER1Q8IY67 606 aaKnown RBP13.01□□□□□ -0.33
TPM1-220ENST00000559556 CACNA2D3Q8IZS8 1091 aa13.01□□□□□ -0.33
TPM1-220ENST00000559556 NDUFAF2Q8N183 169 aa13.01□□□□□ -0.33
TPM1-220ENST00000559556 FAM71BQ8TC56 605 aa13.01□□□□□ -0.33
TPM1-220ENST00000559556 SMIM14Q96QK8 99 aa13.01□□□□□ -0.33
TPM1-220ENST00000559556 BPIFA3Q9BQP9 254 aa13.01□□□□□ -0.33
TPM1-220ENST00000559556 POLR1EQ9GZS1 481 aaKnown RBP13.01□□□□□ -0.33
TPM1-220ENST00000559556 OCIAD1Q9NX40 245 aa13.01□□□□□ -0.33
TPM1-220ENST00000559556 SLC39A1Q9NY26 324 aa13.01□□□□□ -0.33
TPM1-220ENST00000559556 VPS18Q9P253 973 aa13.01□□□□□ -0.33
TPM1-220ENST00000559556 TUBD1Q9UJT1 453 aa13.01□□□□□ -0.33
TPM1-220ENST00000559556 PILRAQ9UKJ1 303 aa13.01□□□□□ -0.33
TPM1-220ENST00000559556 DNPEPQ9ULA0 475 aa13.01□□□□□ -0.33
TPM1-220ENST00000559556 TMEM98Q9Y2Y6 226 aa13.01□□□□□ -0.33
TPM1-220ENST00000559556 MDC1Q14676 2089 aaKnown RBP13.01□□□□□ -0.33
TPM1-220ENST00000559556 DOCK10Q96BY6 2186 aa13□□□□□ -0.33
TPM1-220ENST00000559556 PCM1Q15154 2024 aa13□□□□□ -0.33
TPM1-220ENST00000559556 MFSD11O43934 449 aa13□□□□□ -0.33
TPM1-220ENST00000559556 EML2O95834 649 aa13□□□□□ -0.33
TPM1-220ENST00000559556 GARSP41250 739 aaKnown RBP13□□□□□ -0.33
TPM1-220ENST00000559556 IHHQ14623 411 aa13□□□□□ -0.33
TPM1-220ENST00000559556 DCAF12Q5T6F0 453 aa13□□□□□ -0.33
TPM1-220ENST00000559556 WDR74Q6RFH5 385 aaPredicted RBP13□□□□□ -0.33
TPM1-220ENST00000559556 MARK2Q7KZI7 788 aaKnown RBP13□□□□□ -0.33
TPM1-220ENST00000559556 FAM129CQ86XR2 697 aa13□□□□□ -0.33
TPM1-220ENST00000559556 NRSN1Q8IZ57 195 aa13□□□□□ -0.33
TPM1-220ENST00000559556 OR10G6Q8NH81 332 aa13□□□□□ -0.33
TPM1-220ENST00000559556 EXD1Q8NHP7 514 aa13□□□□□ -0.33
TPM1-220ENST00000559556 MAML1Q92585 1016 aa13□□□□□ -0.33
TPM1-220ENST00000559556 FATE1Q969F0 183 aa13□□□□□ -0.33
TPM1-220ENST00000559556 GBP4Q96PP9 640 aa13□□□□□ -0.33
TPM1-220ENST00000559556 TEFMQ96QE5 360 aaKnown RBP13□□□□□ -0.33
TPM1-220ENST00000559556 SARS2Q9NP81 518 aaKnown RBP13□□□□□ -0.33
TPM1-220ENST00000559556 AMACRQ9UHK6 382 aa13□□□□□ -0.33
TPM1-220ENST00000559556 NOTCH2Q04721 2471 aa13□□□□□ -0.33
TPM1-220ENST00000559556 CACNA1DQ01668 2161 aa13□□□□□ -0.33
TPM1-220ENST00000559556 CNTRLQ7Z7A1 2325 aa12.99□□□□□ -0.33
TPM1-220ENST00000559556 A0A1B0GTH6 734 aa12.99□□□□□ -0.33
TPM1-220ENST00000559556 EFCAB7A8K855 629 aa12.99□□□□□ -0.33
TPM1-220ENST00000559556 ZNF891A8MT65 544 aaPredicted RBP12.99□□□□□ -0.33
TPM1-220ENST00000559556 CAPN5O15484 640 aaPredicted RBP12.99□□□□□ -0.33
TPM1-220ENST00000559556 RAD1O60671 282 aa12.99□□□□□ -0.33
TPM1-220ENST00000559556 DNAJC6O75061 913 aa12.99□□□□□ -0.33
TPM1-220ENST00000559556 MAP3K6O95382 1288 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms