RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 ACSS1Q9NUB1 689 aaPredicted RBP1.66□□□□□ -2.14
USP3-209ENST00000558925 TMEM51Q9NW97 253 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 ARHGEF38Q9NXL2 777 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 HEY2Q9UBP5 337 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 MORF4L1Q9UBU8 362 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 TINAGQ9UJW2 476 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 RCOR1Q9UKL0 485 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 PADI3Q9ULW8 664 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 ERVK-11Q9UQG0 969 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 B3GALT5Q9Y2C3 310 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 INSL5Q9Y5Q6 135 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 SLC4A4Q9Y6R1 1079 aa1.66□□□□□ -2.14
USP3-209ENST00000558925 ZMYM2Q9UBW7 1377 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 GPR75-ASB3A0A0A6YYF3 556 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 TRBC2A0A5B9 178 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 A6NL46 340 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 BECN2A8MW95 431 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 A8MXE2 369 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 AKR1B15C9JRZ8 316 aaPredicted RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 PRPF4O43172 522 aaKnown RBP eCLIP1.65□□□□□ -2.15
USP3-209ENST00000558925 KIF1CO43896 1103 aaKnown RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 ZIC3O60481 467 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 AVILO75366 819 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 JRKO75564 520 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 RSL1D1O76021 490 aaKnown RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 DDNO94850 711 aaPredicted RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 CSPG5O95196 566 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 EGFP01133 1207 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 IFNA2P01563 188 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 RPN1P04843 607 aaKnown RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 ABCB1P08183 1280 aaPredicted RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 MYZAPP0CAP1 466 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 ENO3P13929 434 aaPredicted RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 PRF1P14222 555 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 PRLRP16471 622 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 TMEM11P17152 192 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 MAOAP21397 527 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 CERS1P27544 350 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 HOXA13P31271 388 aaPredicted RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 HNRNPH1P31943 449 aaKnown RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 MSH2P43246 934 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 CAPZA2P47755 286 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 LIG4P49917 911 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 RAD23AP54725 363 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 CDH13P55290 713 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 FOXG1P55316 489 aaPredicted RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 CXCL9Q07325 125 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 SREBF2Q12772 1141 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 GRSF1Q12849 480 aaKnown RBP eCLIP1.65□□□□□ -2.15
USP3-209ENST00000558925 SNTB1Q13884 538 aaKnown RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 KLF9Q13886 244 aaPredicted RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 KCNC3Q14003 757 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 GPR18Q14330 331 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 RBMS2Q15434 407 aaKnown RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 ADIPOQQ15848 244 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 PNLIPRP3Q17RR3 467 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 SOWAHCQ53LP3 525 aaPredicted RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 ZNF805Q5CZA5 627 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 WASHC2DQ5SRD0 308 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 RARS2Q5T160 578 aaKnown RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 C10orf25Q5T742 122 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 C6orf163Q5TEZ5 329 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 ZNF626Q68DY1 528 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 TMEM211Q6ICI0 200 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 TEX38Q6PEX7 206 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 SHQ1Q6PI26 577 aaKnown RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 SHC4Q6S5L8 630 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 IL27RAQ6UWB1 636 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 SUSD1Q6UWL2 747 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 DEF8Q6ZN54 512 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 SHFQ7M4L6 423 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 PTF1AQ7RTS3 328 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 ZNF367Q7RTV3 350 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 ATG9AQ7Z3C6 839 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 GALNTL5Q7Z4T8 443 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 TECPR1Q7Z6L1 1165 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 SLFN11Q7Z7L1 901 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 ADIPOR2Q86V24 386 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 GALNT13Q8IUC8 556 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 ZNF595Q8IYB9 648 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 RNF168Q8IYW5 571 aaPredicted RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 BEST3Q8N1M1 668 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 FBXO39Q8N4B4 442 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 SPATA6LQ8N4H0 392 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 TMEM199Q8N511 208 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 MINDY1Q8N5J2 469 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 SYT2Q8N9I0 419 aaPredicted RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 TEX45Q8NA69 505 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 RBM15BQ8NDT2 890 aaKnown RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 AGBL3Q8NEM8 1001 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 ACVR1CQ8NER5 493 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 PTPMT1Q8WUK0 201 aaPredicted RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 MRPS27Q92552 414 aaKnown RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 SGCDQ92629 289 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 LRRC59Q96AG4 307 aaKnown RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 PTERQ96BW5 349 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 ORAI1Q96D31 301 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 URB1-AS1Q96HZ7 61 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 VCPIP1Q96JH7 1222 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 ZNF333Q96JL9 665 aa1.65□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms