RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 ASLP04424 464 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 SLC6A2P23975 617 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 HTR7P34969 479 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 NHSL2Q5HYW2 709 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 TBCELQ5QJ74 424 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 VARS2Q5ST30 1063 aaKnown RBP12.84□□□□□ -0.35
LDLR-207ENST00000558013 B3GNT6Q6ZMB0 384 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 OR4K2Q8NGD2 314 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 OR2T34Q8NGX1 318 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 OR2T3Q8NH03 318 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 TADA1Q96BN2 335 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 CDKN2AIPNLQ96HQ2 116 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 SEPT5Q99719 369 aaPredicted RBP12.84□□□□□ -0.35
LDLR-207ENST00000558013 PDE4DIPQ5VU43 2346 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 KPNA6O60684 536 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 CDH2P19022 906 aaPredicted RBP12.84□□□□□ -0.35
LDLR-207ENST00000558013 SCNN1BP51168 640 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 PLIN5Q00G26 463 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 CAP1Q01518 475 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 CLCQ05315 142 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 GALNT1Q10472 559 aaPredicted RBP12.84□□□□□ -0.35
LDLR-207ENST00000558013 ZNF235Q14590 738 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 PAGE3Q5JUK9 113 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 KRT80Q6KB66 452 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 LRRC49Q8IUZ0 686 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 PIANPQ8IYJ0 282 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 TRIML2Q8N7C3 387 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 BTN2A3PQ96KV6 586 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 CATSPERZQ9NTU4 200 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.84□□□□□ -0.35
LDLR-207ENST00000558013 SMOXQ9NWM0 555 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 PCDHB8Q9UN66 801 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 IGLV3-10A0A075B6K4 115 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 ASPDHA6ND91 283 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 NPEPPSL1A6NEC2 478 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 IQCF5A8MTL0 148 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 NT5C1B-RDH14C9J2C7 533 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 RHOBTB1O94844 696 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 CYBAP13498 195 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 GATMP50440 423 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 STC1P52823 247 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 RPS24P62847 133 aaKnown RBP12.83□□□□□ -0.36
LDLR-207ENST00000558013 NRG1Q02297 640 aaPredicted RBP12.83□□□□□ -0.36
LDLR-207ENST00000558013 TRAP1Q12931 704 aaKnown RBP12.83□□□□□ -0.36
LDLR-207ENST00000558013 MBTPS1Q14703 1052 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 MDGA1Q8NFP4 955 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 ZIC5Q96T25 663 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 GPR21Q99679 349 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 TRMOQ9BU70 441 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 GPR62Q9BZJ7 368 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 POLR1EQ9GZS1 481 aaKnown RBP12.83□□□□□ -0.36
LDLR-207ENST00000558013 EVLQ9UI08 416 aaPredicted RBP12.83□□□□□ -0.36
LDLR-207ENST00000558013 TMX2-CTNND1H3BSU7 103 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 ANGPT2O15123 496 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 HNRNPRO43390 633 aaKnown RBP12.83□□□□□ -0.36
LDLR-207ENST00000558013 ECI2O75521 394 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 TYMPP19971 482 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 CCND3P30281 292 aaPredicted RBP12.83□□□□□ -0.36
LDLR-207ENST00000558013 SLC6A4P31645 630 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 ACADVLP49748 655 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 UFM1P61960 85 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 TXNL4AP83876 142 aaKnown RBP12.83□□□□□ -0.36
LDLR-207ENST00000558013 CRHR2Q13324 411 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 RPS6KA2Q15349 733 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 C18orf21Q32NC0 220 aaPredicted RBP12.83□□□□□ -0.36
LDLR-207ENST00000558013 CTXN3Q4LDR2 81 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 CPNE9Q8IYJ1 553 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 CMTR2Q8IYT2 770 aaKnown RBP12.83□□□□□ -0.36
LDLR-207ENST00000558013 LGI2Q8N0V4 545 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 MIER2Q8N344 545 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 LINC01599Q8WXQ3 324 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 PBXIP1Q96AQ6 731 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 RMDN1Q96DB5 314 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 CCDC97Q96F63 343 aaPredicted RBP12.83□□□□□ -0.36
LDLR-207ENST00000558013 ZFRQ96KR1 1074 aaKnown RBP12.83□□□□□ -0.36
LDLR-207ENST00000558013 PPP1R2P1Q96PQ5 205 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 PTTG2Q9NZH5 202 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 RNF112Q9ULX5 631 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 PCDHGC4Q9Y5F7 938 aa12.83□□□□□ -0.36
LDLR-207ENST00000558013 NIPSNAP2O75323 286 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 RPP40O75818 363 aaKnown RBP12.82□□□□□ -0.36
LDLR-207ENST00000558013 OAZ2O95190 189 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 H6PDO95479 791 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 HSPA13P48723 471 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 NR1H2P55055 460 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 FAM171A1Q5VUB5 890 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 KANK2Q63ZY3 851 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 MRNIPQ6NTE8 343 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 OR2T11Q8NH01 316 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 LRRC58Q96CX6 371 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 AARSD1Q9BTE6 412 aaKnown RBP12.82□□□□□ -0.36
LDLR-207ENST00000558013 RRAGCQ9HB90 399 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 SLC52A3Q9NQ40 469 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 NDUFAF1Q9Y375 327 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 ANKRD33BA6NCL7 494 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 INPP4BO15327 924 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 PRAMEF11O60813 436 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 NFKB2Q00653 900 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 IL10RBQ08334 325 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 MAP7Q14244 749 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms