RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 RAB2BQ8WUD1 216 aa16.22■□□□□ 0.19
SHMT2-231ENST00000557433 SNRNP27Q8WVK2 155 aaKnown RBP16.22■□□□□ 0.19
SHMT2-231ENST00000557433 FBXL20Q96IG2 436 aa16.22■□□□□ 0.19
SHMT2-231ENST00000557433 LRCH3Q96II8 777 aa16.22■□□□□ 0.19
SHMT2-231ENST00000557433 MUC3BQ9H195 1237 aa16.22■□□□□ 0.19
SHMT2-231ENST00000557433 ATXN3LQ9H3M9 355 aa16.22■□□□□ 0.19
SHMT2-231ENST00000557433 SYTL2Q9HCH5 934 aa16.22■□□□□ 0.19
SHMT2-231ENST00000557433 SFMBT1Q9UHJ3 866 aa16.22■□□□□ 0.19
SHMT2-231ENST00000557433 POLG2Q9UHN1 485 aa16.22■□□□□ 0.19
SHMT2-231ENST00000557433 OAS3Q9Y6K5 1087 aaKnown RBP16.22■□□□□ 0.19
SHMT2-231ENST00000557433 PLXNB2O15031 1838 aa16.22■□□□□ 0.19
SHMT2-231ENST00000557433 SOBPA7XYQ1 873 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 ADM5C9JUS6 153 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 SEC24DO94855 1032 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-231ENST00000557433 THP07101 528 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 MBL2P11226 248 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-231ENST00000557433 RABGGTBP53611 331 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 EPS8Q12929 822 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 CBX3Q13185 183 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 GRB7Q14451 532 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 RBM48Q5RL73 367 aaKnown RBP16.21■□□□□ 0.19
SHMT2-231ENST00000557433 BROXQ5VW32 411 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 METTL23Q86XA0 190 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 AADATQ8N5Z0 425 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 CHPT1Q8WUD6 406 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 TADA1Q96BN2 335 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 BRINP2Q9C0B6 783 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 GPN2Q9H9Y4 310 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-231ENST00000557433 AIG1Q9NVV5 245 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 ZIM2Q9NZV7 527 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 GMPR2Q9P2T1 348 aaKnown RBP16.21■□□□□ 0.19
SHMT2-231ENST00000557433 MAGEL2Q9UJ55 1249 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 A0A1W2PPW3 197 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 E9PAM4 449 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 TPST1O60507 370 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 KERAO60938 352 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 DNAJB5O75953 348 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 SEC14L2O76054 403 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 GLP2RO95838 553 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 PEX11BO96011 259 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 CHEK2O96017 543 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 HPRP00739 348 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 CYBBP04839 570 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 ENO2P09104 434 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-231ENST00000557433 ODC1P11926 461 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 ZNF37AP17032 561 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-231ENST00000557433 UGT1A6P19224 532 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 CDH13P55290 713 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 CAPRIN1Q14444 709 aaKnown RBP16.21■□□□□ 0.19
SHMT2-231ENST00000557433 MFSD10Q14728 455 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 ARTNQ5T4W7 220 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 MARC1Q5VT66 337 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 ANKRD26P1Q6NSI1 321 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 TMEM26Q6ZUK4 368 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 STAG3L4Q8TBR4 150 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 FAM110BQ8TC76 370 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 KIAA1191Q96A73 305 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 ATOH8Q96SQ7 321 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 C1QTNF3Q9BXJ4 246 aa16.21■□□□□ 0.19
SHMT2-231ENST00000557433 IFT80Q9P2H3 777 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-231ENST00000557433 C16orf96A6NNT2 1141 aa16.2■□□□□ 0.18
SHMT2-231ENST00000557433 SYCE1LA8MT33 242 aa16.2■□□□□ 0.18
SHMT2-231ENST00000557433 CRCPO75575 148 aa16.2■□□□□ 0.18
SHMT2-231ENST00000557433 CDH1P12830 882 aa16.2■□□□□ 0.18
SHMT2-231ENST00000557433 MTHFD2P13995 350 aa16.2■□□□□ 0.18
SHMT2-231ENST00000557433 TSPAN8P19075 237 aa16.2■□□□□ 0.18
SHMT2-231ENST00000557433 MAP4P27816 1152 aaKnown RBP16.2■□□□□ 0.18
SHMT2-231ENST00000557433 CLCQ05315 142 aa16.2■□□□□ 0.18
SHMT2-231ENST00000557433 NFATC3Q12968 1075 aa16.2■□□□□ 0.18
SHMT2-231ENST00000557433 ANKS6Q68DC2 871 aa16.2■□□□□ 0.18
SHMT2-231ENST00000557433 C16orf87Q6PH81 154 aa16.2■□□□□ 0.18
SHMT2-231ENST00000557433 TXNDC11Q6PKC3 985 aa16.2■□□□□ 0.18
SHMT2-231ENST00000557433 DCDC5Q6ZRR9 648 aa16.2■□□□□ 0.18
SHMT2-231ENST00000557433 CTU1Q7Z7A3 348 aaKnown RBP16.2■□□□□ 0.18
SHMT2-231ENST00000557433 TMEM199Q8N511 208 aa16.2■□□□□ 0.18
SHMT2-231ENST00000557433 TEX26Q8N6G2 289 aa16.2■□□□□ 0.18
SHMT2-231ENST00000557433 MAGEE2Q8TD90 523 aaPredicted RBP16.2■□□□□ 0.18
SHMT2-231ENST00000557433 BPIFB1Q8TDL5 484 aa16.2■□□□□ 0.18
SHMT2-231ENST00000557433 TUBB1Q9H4B7 451 aa16.2■□□□□ 0.18
SHMT2-231ENST00000557433 SUN2Q9UH99 717 aa16.2■□□□□ 0.18
SHMT2-231ENST00000557433 ITGB1BP2Q9UKP3 347 aa16.2■□□□□ 0.18
SHMT2-231ENST00000557433 DSEQ9UL01 958 aa16.2■□□□□ 0.18
SHMT2-231ENST00000557433 SLC45A1Q9Y2W3 748 aa16.2■□□□□ 0.18
SHMT2-231ENST00000557433 CCDC154A6NI56 674 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 IFRD1O00458 451 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-231ENST00000557433 STX16O14662 325 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 ATP6V1G1O75348 118 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 DEAF1O75398 565 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-231ENST00000557433 PRSS23O95084 383 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 MLYCDO95822 493 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 CYP11A1P05108 521 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 OCM2P0CE71 109 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 OCMP0CE72 109 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-231ENST00000557433 RHOQP17081 205 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 UGT1A1P22309 533 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 UGT1A4P22310 534 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 RPL10P27635 214 aaKnown RBP16.19■□□□□ 0.18
SHMT2-231ENST00000557433 UGT1A3P35503 534 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 UGT1A5P35504 534 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 CD86P42081 329 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms