RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 PPIL1Q9Y3C6 166 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 GOLGA4Q13439 2230 aaKnown RBP7.31□□□□□ -1.24
SCFD1-222ENST00000556768 ZFYVE26Q68DK2 2539 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 FAM208BQ5VWN6 2430 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 A0A087WV48 116 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 A0A0J9YYE9 177 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 PRSS38A1L453 326 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 NPIPB15A6NHN6 443 aaPredicted RBP7.31□□□□□ -1.24
SCFD1-222ENST00000556768 ANKRD66B4E2M5 251 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 KCNK1O00180 336 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 BRINP1O60477 761 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 MTA2O94776 668 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 STK10O94804 968 aaKnown RBP7.31□□□□□ -1.24
SCFD1-222ENST00000556768 ZRANB2O95218 330 aaKnown RBP eCLIP7.31□□□□□ -1.24
SCFD1-222ENST00000556768 TRBC1P01850 177 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 KRT1P04264 644 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 GLB1P16278 677 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 CETN2P41208 172 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 LSSP48449 732 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 ST13P50502 369 aaKnown RBP7.31□□□□□ -1.24
SCFD1-222ENST00000556768 NAP1L1P55209 391 aaKnown RBP7.31□□□□□ -1.24
SCFD1-222ENST00000556768 DPTQ07507 201 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 ISXQ2M1V0 245 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 LRRC66Q68CR7 880 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 C19orf48Q6RUI8 117 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 NT5DC3Q86UY8 548 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 NLRP8Q86W28 1048 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 HEATR4Q86WZ0 1026 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 NRSN1Q8IZ57 195 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 EXD1Q8NHP7 514 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 PIH1D2Q8WWB5 315 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 CCDC74AQ96AQ1 378 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 PDXPQ96GD0 296 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 ZNF578Q96N58 590 aaPredicted RBP7.31□□□□□ -1.24
SCFD1-222ENST00000556768 GFM1Q96RP9 751 aaKnown RBP7.31□□□□□ -1.24
SCFD1-222ENST00000556768 MCCC1Q96RQ3 725 aaPredicted RBP7.31□□□□□ -1.24
SCFD1-222ENST00000556768 SRPK1Q96SB4 655 aaKnown RBP7.31□□□□□ -1.24
SCFD1-222ENST00000556768 LGMNQ99538 433 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 MLPHQ9BV36 600 aaPredicted RBP7.31□□□□□ -1.24
SCFD1-222ENST00000556768 TEX101Q9BY14 249 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 CDH19Q9H159 772 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 POLR1BQ9H9Y6 1135 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 TRNAU1APQ9NX07 287 aaKnown RBP7.31□□□□□ -1.24
SCFD1-222ENST00000556768 SEPT10Q9P0V9 454 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 CHKBQ9Y259 395 aa7.31□□□□□ -1.24
SCFD1-222ENST00000556768 SMG1Q96Q15 3661 aaKnown RBP7.31□□□□□ -1.24
SCFD1-222ENST00000556768 APC2O95996 2303 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 TRPM6Q9BX84 2022 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 C1orf232A0A0U1RR37 186 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 RGSL1A5PLK6 1076 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 EIF4E1BA6NMX2 242 aaKnown RBP7.3□□□□□ -1.24
SCFD1-222ENST00000556768 MTSS1O43312 755 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 ASMTLO95671 621 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 MPOP05164 745 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 PDHA1P08559 390 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 COMTP21964 271 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 TGM2P21980 687 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 TEAD1P28347 426 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 CD86P42081 329 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 ERVPABLB-1P60509 514 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 DYNLT1P63172 113 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 GABREP78334 506 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 CDK3Q00526 305 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 DSC2Q02487 901 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 PPIDQ08752 370 aaKnown RBP7.3□□□□□ -1.24
SCFD1-222ENST00000556768 TCEAL1Q15170 157 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 CCDC181Q5TID7 509 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 BROXQ5VW32 411 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 CDCP2Q5VXM1 449 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 CRTC1Q6UUV9 634 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 HSD11B1LQ7Z5J1 315 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 CCDC50Q8IVM0 306 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 CBARPQ8N350 705 aaPredicted RBP7.3□□□□□ -1.24
SCFD1-222ENST00000556768 TXLNBQ8N3L3 684 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 PQLC3Q8N755 202 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 PLD5Q8N7P1 536 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 ZNF248Q8NDW4 579 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 LPCAT1Q8NF37 534 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 EPS8L3Q8TE67 593 aaKnown RBP7.3□□□□□ -1.24
SCFD1-222ENST00000556768 OR1E3Q8WZA6 343 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 P3H4Q92791 437 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 AGAP3Q96P47 875 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 LGR4Q9BXB1 951 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 TDRD1Q9BXT4 1180 aaKnown RBP7.3□□□□□ -1.24
SCFD1-222ENST00000556768 TMEM168Q9H0V1 697 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 SUDS3Q9H7L9 328 aaPredicted RBP7.3□□□□□ -1.24
SCFD1-222ENST00000556768 FGF22Q9HCT0 170 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 MRPL40Q9NQ50 206 aaKnown RBP7.3□□□□□ -1.24
SCFD1-222ENST00000556768 RAD18Q9NS91 495 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 PKD2L2Q9NZM6 624 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 AKAP7Q9P0M2 348 aaPredicted RBP7.3□□□□□ -1.24
SCFD1-222ENST00000556768 FAM8A1Q9UBU6 413 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 DOCK4Q8N1I0 1966 aa7.3□□□□□ -1.24
SCFD1-222ENST00000556768 URB1O60287 2271 aaKnown RBP7.29□□□□□ -1.24
SCFD1-222ENST00000556768 LY6G6EA0A0G2JKS1 128 aa7.29□□□□□ -1.24
SCFD1-222ENST00000556768 CAPN8A6NHC0 703 aa7.29□□□□□ -1.24
SCFD1-222ENST00000556768 RHPN2P1A8MT19 583 aa7.29□□□□□ -1.24
SCFD1-222ENST00000556768 B4DGG1 531 aa7.29□□□□□ -1.24
SCFD1-222ENST00000556768 PSTPIP1O43586 416 aa7.29□□□□□ -1.24
SCFD1-222ENST00000556768 NUDT21O43809 227 aaKnown RBP7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms