RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 PCED1AQ9H1Q7 454 aa11.17□□□□□ -0.62
SHMT2-216ENST00000554975 LRMDAQ9H2I8 198 aa11.17□□□□□ -0.62
SHMT2-216ENST00000554975 STN1Q9H668 368 aaKnown RBP11.17□□□□□ -0.62
SHMT2-216ENST00000554975 ABCC13Q9NSE7 274 aa11.17□□□□□ -0.62
SHMT2-216ENST00000554975 OLA1Q9NTK5 396 aaKnown RBP11.17□□□□□ -0.62
SHMT2-216ENST00000554975 DDIT4Q9NX09 232 aa11.17□□□□□ -0.62
SHMT2-216ENST00000554975 KLHL8Q9P2G9 620 aaPredicted RBP11.17□□□□□ -0.62
SHMT2-216ENST00000554975 CAPN8A6NHC0 703 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 YJEFN3A6XGL0 299 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 E7ENQ6 273 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 SLC28A2O43868 658 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 SYNCRIPO60506 623 aaKnown RBP11.16□□□□□ -0.62
SHMT2-216ENST00000554975 METTL18O95568 372 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 SEMA4FO95754 770 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 KLKB1P03952 638 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 EPHX1P07099 455 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 C6P13671 934 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 CORO1AP31146 461 aaKnown RBP11.16□□□□□ -0.62
SHMT2-216ENST00000554975 CRHR1P34998 444 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 ADRA1BP35368 520 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 HADHAP40939 763 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 ETV4P43268 484 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 ELF3P78545 371 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-216ENST00000554975 PPIDQ08752 370 aaKnown RBP11.16□□□□□ -0.62
SHMT2-216ENST00000554975 ILF2Q12905 390 aaKnown RBP11.16□□□□□ -0.62
SHMT2-216ENST00000554975 MTA1Q13330 715 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 INSCQ1MX18 579 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 RAB6CQ53S08 254 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 SWT1Q5T5J6 900 aaKnown RBP11.16□□□□□ -0.62
SHMT2-216ENST00000554975 CASC4Q6P4E1 433 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 OTOAQ7RTW8 1153 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 LINC00523Q86TU6 105 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 DENND1CQ8IV53 801 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 ARHGAP24Q8N264 748 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 ZNF276Q8N554 614 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 LZTR1Q8N653 840 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 GABPB2Q8TAK5 448 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-216ENST00000554975 ERP27Q96DN0 273 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 WBP1Q96G27 269 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 RMDN2Q96LZ7 410 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 SLC6A18Q96N87 628 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 TMEM237Q96Q45 408 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 LGMNQ99538 433 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 CPNE1Q99829 537 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 WWP1Q9H0M0 922 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 RAB6CQ9H0N0 254 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 GBA3Q9H227 469 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 LRRC40Q9H9A6 602 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 EBF2Q9HAK2 575 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 BFARQ9NZS9 450 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 SFMBT1Q9UHJ3 866 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 ZFP69BQ9UJL9 534 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 ZNF510Q9Y2H8 683 aa11.16□□□□□ -0.62
SHMT2-216ENST00000554975 TLN1Q9Y490 2541 aaKnown RBP11.16□□□□□ -0.62
SHMT2-216ENST00000554975 MAGEB16A2A368 324 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 WNT9AO14904 365 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 CREB3O43889 395 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 HAUS5O94927 633 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 AP2A1O95782 977 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 C1QAP02745 245 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 IGHV4-34P06331 123 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 PYGBP11216 843 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 TFE3P19532 575 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-216ENST00000554975 CD27P26842 260 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 GP5P40197 560 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 HARS2P49590 506 aaKnown RBP11.15□□□□□ -0.62
SHMT2-216ENST00000554975 CXCR3P49682 368 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 RHDQ02161 417 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 NIPAL4Q0D2K0 466 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 GALNT2Q10471 571 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 SLC10A2Q12908 348 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-216ENST00000554975 NME3Q13232 169 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 CRYMQ14894 314 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 SPRED3Q2MJR0 410 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 INAVAQ3KP66 663 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 ACBD5Q5T8D3 534 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-216ENST00000554975 NAPEPLDQ6IQ20 393 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 LCA5Q86VQ0 697 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 LRRC49Q8IUZ0 686 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 IGDCC3Q8IVU1 814 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 FITM2Q8N6M3 262 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 CCNYQ8ND76 341 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 OR2T3Q8NH03 318 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 SAP25Q8TEE9 199 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 PLD4Q96BZ4 506 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 ANKRD27Q96NW4 1050 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 FAM111AQ96PZ2 611 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 ELF4Q99607 663 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-216ENST00000554975 CATSPERBQ9H7T0 1116 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 PIGVQ9NUD9 493 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 ELOVL2Q9NXB9 296 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 MOCS1Q9NZB8 636 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 ZFATQ9P243 1243 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 GRID1Q9ULK0 1009 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 PLLPQ9Y342 182 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 PCDHB1Q9Y5F3 818 aa11.15□□□□□ -0.62
SHMT2-216ENST00000554975 SPTAN1Q13813 2472 aaKnown RBP11.14□□□□□ -0.63
SHMT2-216ENST00000554975 TRAFD1O14545 582 aaPredicted RBP11.14□□□□□ -0.63
SHMT2-216ENST00000554975 VILLO15195 856 aa11.14□□□□□ -0.63
SHMT2-216ENST00000554975 MSI1O43347 362 aaKnown RBP11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms