RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 CAMK1GQ96NX5 476 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 CDK5RAP1Q96SZ6 601 aaKnown RBP5.82□□□□□ -1.48
SCFD1-208ENST00000553278 MLST8Q9BVC4 326 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 MVB12BQ9H7P6 319 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 CYP4F11Q9HBI6 524 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 EPB41L5Q9HCM4 733 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 MLXIPLQ9NP71 852 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 RNF146Q9NTX7 359 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 LARSQ9P2J5 1176 aaKnown RBP5.82□□□□□ -1.48
SCFD1-208ENST00000553278 EPS15L1Q9UBC2 864 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 ARMCX3Q9UH62 379 aaPredicted RBP5.82□□□□□ -1.48
SCFD1-208ENST00000553278 LEF1Q9UJU2 399 aaPredicted RBP5.82□□□□□ -1.48
SCFD1-208ENST00000553278 CDH7Q9ULB5 785 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 KCNK7Q9Y2U2 307 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 RNF114Q9Y508 228 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 ARHGEF40Q8TER5 1519 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 KANSL1LA0AUZ9 987 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 CPED1A4D0V7 1026 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 TMEM202A6NGA9 273 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 FOXO6A8MYZ6 492 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 KDM4EB2RXH2 506 aaPredicted RBP5.81□□□□□ -1.48
SCFD1-208ENST00000553278 RHODO00212 210 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 VCYO14598 125 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 IFIT3O14879 490 aaKnown RBP5.81□□□□□ -1.48
SCFD1-208ENST00000553278 ZBTB14O43829 449 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 TOP3BO95985 862 aaKnown RBP5.81□□□□□ -1.48
SCFD1-208ENST00000553278 GH2P01242 217 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 LINGO3P0C6S8 592 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 CFPP27918 469 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 CHATP28329 748 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 RBPJQ06330 500 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 PKP1Q13835 747 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 PTPRCAPQ14761 206 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 TSTD2Q5T7W7 516 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 SIGIRRQ6IA17 410 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 SPATA21Q7Z572 469 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 ADIPOR2Q86V24 386 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 CEP57Q86XR8 500 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 KLHL7Q8IXQ5 586 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 MAML2Q8IZL2 1156 aaPredicted RBP5.81□□□□□ -1.48
SCFD1-208ENST00000553278 AFAP1Q8N556 730 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 SLC25A41Q8N5S1 370 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 SCCPDHQ8NBX0 429 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 CAGE1Q8TC20 777 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 BCAS4Q8TDM0 211 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 SLC9A6Q92581 669 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 PDLIM2Q96JY6 352 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 RMDN2Q96LZ7 410 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 DACH2Q96NX9 599 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 ATP6V0BQ99437 205 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 PIGMQ9H3S5 423 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 MOV10Q9HCE1 1003 aaKnown RBP5.81□□□□□ -1.48
SCFD1-208ENST00000553278 CHMP1AQ9HD42 196 aaPredicted RBP5.81□□□□□ -1.48
SCFD1-208ENST00000553278 GPR108Q9NPR9 543 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 DDX4Q9NQI0 724 aaKnown RBP5.81□□□□□ -1.48
SCFD1-208ENST00000553278 LAMP3Q9UQV4 416 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 SLC4A4Q9Y6R1 1079 aa5.81□□□□□ -1.48
SCFD1-208ENST00000553278 A0A087WV48 116 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 HSPB6O14558 160 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 MAP2K7O14733 419 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 RGS11O94810 467 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 CAMTA2O94983 1202 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 ZNF202O95125 648 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 GBAP04062 536 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 ZFYP08048 801 aaPredicted RBP5.8□□□□□ -1.48
SCFD1-208ENST00000553278 KRT4P19013 534 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 UBA1P22314 1058 aaKnown RBP5.8□□□□□ -1.48
SCFD1-208ENST00000553278 DNASE1P24855 282 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 MTHFRP42898 656 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 SOX10P56693 466 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 YPEL5P62699 121 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 RPA4Q13156 261 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 CBX3Q13185 183 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 ITGA7Q13683 1181 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 C2orf68Q2NKX9 166 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 INTS8Q75QN2 995 aaKnown RBP5.8□□□□□ -1.48
SCFD1-208ENST00000553278 NUP54Q7Z3B4 507 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 CACNA2D4Q7Z3S7 1137 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 FAM217AQ8IXS0 508 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 PALM2Q8IXS6 379 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 LMNTD2Q8IXW0 634 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 TTC9BQ8N6N2 239 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 LRRC57Q8N9N7 239 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 CACTINQ8WUQ7 758 aaKnown RBP5.8□□□□□ -1.48
SCFD1-208ENST00000553278 REPS1Q96D71 796 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 HES6Q96HZ4 224 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 INTS14Q96SY0 518 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 ZNF341Q9BYN7 854 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 PCED1AQ9H1Q7 454 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 PNRC2Q9NPJ4 139 aaKnown RBP5.8□□□□□ -1.48
SCFD1-208ENST00000553278 SLC2A4RGQ9NR83 387 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 SYBUQ9NX95 663 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 TAS2R14Q9NYV8 317 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 FOXJ2Q9P0K8 574 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 SLC24A2Q9UI40 661 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 DBNLQ9UJU6 430 aaKnown RBP5.8□□□□□ -1.48
SCFD1-208ENST00000553278 PCDHGA5Q9Y5G8 931 aa5.8□□□□□ -1.48
SCFD1-208ENST00000553278 ZNF335Q9H4Z2 1342 aaPredicted RBP5.79□□□□□ -1.48
SCFD1-208ENST00000553278 A0A0B4J293 547 aa5.79□□□□□ -1.48
SCFD1-208ENST00000553278 A0A1W2PRV1 198 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms