RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 FNBP1LQ5T0N5 605 aa4.16□□□□□ -1.74
VPS29-205ENST00000548539 OTUD1Q5VV17 481 aaPredicted RBP4.16□□□□□ -1.74
VPS29-205ENST00000548539 SIGIRRQ6IA17 410 aa4.16□□□□□ -1.74
VPS29-205ENST00000548539 PDXDC1Q6P996 788 aa4.16□□□□□ -1.74
VPS29-205ENST00000548539 SDCCAG8Q86SQ7 713 aaPredicted RBP4.16□□□□□ -1.74
VPS29-205ENST00000548539 RNF168Q8IYW5 571 aaPredicted RBP4.16□□□□□ -1.74
VPS29-205ENST00000548539 DSELQ8IZU8 1212 aa4.16□□□□□ -1.74
VPS29-205ENST00000548539 RBMXL3Q8N7X1 1067 aaKnown RBP4.16□□□□□ -1.74
VPS29-205ENST00000548539 CCDC191Q8NCU4 936 aa4.16□□□□□ -1.74
VPS29-205ENST00000548539 APPL2Q8NEU8 664 aa4.16□□□□□ -1.74
VPS29-205ENST00000548539 SEPT5Q99719 369 aaPredicted RBP4.16□□□□□ -1.74
VPS29-205ENST00000548539 APOL6Q9BWW8 343 aa4.16□□□□□ -1.74
VPS29-205ENST00000548539 TEX12Q9BXU0 123 aa4.16□□□□□ -1.74
VPS29-205ENST00000548539 KCNN2Q9H2S1 579 aa4.16□□□□□ -1.74
VPS29-205ENST00000548539 PLAC1Q9HBJ0 212 aa4.16□□□□□ -1.74
VPS29-205ENST00000548539 LTB4R2Q9NPC1 389 aa4.16□□□□□ -1.74
VPS29-205ENST00000548539 CPSF2Q9P2I0 782 aaKnown RBP4.16□□□□□ -1.74
VPS29-205ENST00000548539 COPG2Q9UBF2 871 aa4.16□□□□□ -1.74
VPS29-205ENST00000548539 SEC63Q9UGP8 760 aaKnown RBP4.16□□□□□ -1.74
VPS29-205ENST00000548539 A0A1B0GVT2 93 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 TNFRSF13BO14836 293 aaPredicted RBP4.15□□□□□ -1.75
VPS29-205ENST00000548539 MITFO75030 526 aaPredicted RBP4.15□□□□□ -1.75
VPS29-205ENST00000548539 VNN2O95498 520 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 LCATP04180 440 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 PSG1P11464 419 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 MMP9P14780 707 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 MAOAP21397 527 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 GPTP24298 496 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 RPL3P39023 403 aaKnown RBP4.15□□□□□ -1.75
VPS29-205ENST00000548539 PRCPP42785 496 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 SUOXP51687 545 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 STAT2P52630 851 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 MRPS5P82675 430 aaKnown RBP4.15□□□□□ -1.75
VPS29-205ENST00000548539 ADORA2A-AS1P86434 159 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 ECT2LQ008S8 904 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 ST3GAL1Q11201 340 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 PRPF4BQ13523 1007 aaKnown RBP4.15□□□□□ -1.75
VPS29-205ENST00000548539 PNLIPRP3Q17RR3 467 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 FSCBQ5H9T9 825 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 GGNBP1Q5YKI7 109 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 TYW3Q6IPR3 259 aaKnown RBP4.15□□□□□ -1.75
VPS29-205ENST00000548539 PLEKHA7Q6IQ23 1121 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 ZNF280DQ6N043 979 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 NAA16Q6N069 864 aaPredicted RBP4.15□□□□□ -1.75
VPS29-205ENST00000548539 SLC36A4Q6YBV0 504 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 PRPF39Q86UA1 669 aaKnown RBP4.15□□□□□ -1.75
VPS29-205ENST00000548539 DNAAF5Q86Y56 855 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 SCYL3Q8IZE3 742 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 AADATQ8N5Z0 425 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 PRPF31Q8WWY3 499 aaKnown RBP4.15□□□□□ -1.75
VPS29-205ENST00000548539 RND1Q92730 232 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 TXNDC15Q96J42 360 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 EGLN2Q96KS0 407 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 GCNAQ96QF7 691 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 HAUS8Q9BT25 410 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 AP1M1Q9BXS5 423 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 SEBOXQ9HB31 216 aaPredicted RBP4.15□□□□□ -1.75
VPS29-205ENST00000548539 CNGB3Q9NQW8 809 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 ACSS1Q9NUB1 689 aaPredicted RBP4.15□□□□□ -1.75
VPS29-205ENST00000548539 GIMAP4Q9NUV9 329 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 POT1Q9NUX5 634 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 MTMR10Q9NXD2 777 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 ARHGEF38Q9NXL2 777 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 TTC7AQ9ULT0 858 aaPredicted RBP4.15□□□□□ -1.75
VPS29-205ENST00000548539 PAM16Q9Y3D7 125 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 PASKQ96RG2 1323 aa4.15□□□□□ -1.75
VPS29-205ENST00000548539 LY6G6EA0A0G2JKS1 128 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 A0A1B0GVM2 712 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 A0A1W2PR77 199 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 LRRC72A6NJI9 287 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 CD8B2A6NJW9 211 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 B4DGG1 531 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 PRSS44E7EML9 344 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 ADAMDEC1O15204 470 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 PAPSS1O43252 624 aaPredicted RBP4.14□□□□□ -1.75
VPS29-205ENST00000548539 HSPA12AO43301 675 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 RGS14O43566 566 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 KRT86O43790 486 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 EGFP01133 1207 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 ICAM1P05362 532 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 HOXB2P14652 356 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 MT3P25713 68 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 ACADLP28330 430 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 HOXA13P31271 388 aaPredicted RBP4.14□□□□□ -1.75
VPS29-205ENST00000548539 HNRNPH1P31943 449 aaKnown RBP4.14□□□□□ -1.75
VPS29-205ENST00000548539 MSH2P43246 934 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 NANOS2P60321 138 aaKnown RBP4.14□□□□□ -1.75
VPS29-205ENST00000548539 MRPS34P82930 218 aaKnown RBP4.14□□□□□ -1.75
VPS29-205ENST00000548539 ZBED6P86452 979 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 GRSF1Q12849 480 aaKnown RBP eCLIP4.14□□□□□ -1.75
VPS29-205ENST00000548539 GPS2Q13227 327 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 KCNC3Q14003 757 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 KRT81Q14533 505 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 EFNB3Q15768 340 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 SOWAHCQ53LP3 525 aaPredicted RBP4.14□□□□□ -1.75
VPS29-205ENST00000548539 DNTTIP2Q5QJE6 756 aaKnown RBP4.14□□□□□ -1.75
VPS29-205ENST00000548539 GARNL3Q5VVW2 1013 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 RPUSD3Q6P087 351 aaKnown RBP4.14□□□□□ -1.75
VPS29-205ENST00000548539 METTL2BQ6P1Q9 378 aaKnown RBP4.14□□□□□ -1.75
VPS29-205ENST00000548539 TAOK1Q7L7X3 1001 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms