RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 MAPRE2Q15555 327 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 PTPRNQ16849 979 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 MMEL1Q495T6 779 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 OR52E8Q6IFG1 317 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 EFHBQ8N7U6 833 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 KCNA7Q96RP8 456 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 CCDC68Q9H2F9 335 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 AKTIPQ9H8T0 292 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 ADA2Q9NZK5 511 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 A0A1B0GTL3 188 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 SUPT3HB4E1H0 165 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 E7ENX8 843 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 CDC7O00311 574 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 OR1I1O60431 355 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 CLASP2O75122 1294 aaKnown RBP18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 SUPT3HO75486 399 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 SNRPB2P08579 225 aaKnown RBP18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 MC4RP32245 332 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 VEGFBP49765 207 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 TSNQ15631 228 aaKnown RBP18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 TAF12Q16514 161 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 FBXO48Q5FWF7 155 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 OGFRL1Q5TC84 451 aaPredicted RBP18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 PAOXQ6QHF9 649 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 STAG3L4Q8TBR4 150 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 TRPC4APQ8TEL6 797 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 TRMT2BQ96GJ1 504 aaKnown RBP18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 ZFRQ96KR1 1074 aaKnown RBP18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 ASB2Q96Q27 587 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 VCXQ9H320 206 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 C6orf203Q9P0P8 240 aaPredicted RBP18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 SARDHQ9UL12 918 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 RNF112Q9ULX5 631 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 OAS3Q9Y6K5 1087 aaKnown RBP18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 TRIM38O00635 465 aa18.44■□□□□ 0.54
PRPF40B-208ENST00000548436 AZIN1O14977 448 aa18.44■□□□□ 0.54
PRPF40B-208ENST00000548436 EEF1DP29692 281 aaKnown RBP18.44■□□□□ 0.54
PRPF40B-208ENST00000548436 RAD51Q06609 339 aa18.44■□□□□ 0.54
PRPF40B-208ENST00000548436 NCEH1Q6PIU2 408 aa18.44■□□□□ 0.54
PRPF40B-208ENST00000548436 TMEM150AQ86TG1 271 aa18.44■□□□□ 0.54
PRPF40B-208ENST00000548436 FUNDC1Q8IVP5 155 aa18.44■□□□□ 0.54
PRPF40B-208ENST00000548436 TWIST2Q8WVJ9 160 aa18.44■□□□□ 0.54
PRPF40B-208ENST00000548436 KLHL32Q96NJ5 620 aa18.44■□□□□ 0.54
PRPF40B-208ENST00000548436 SLC22A12Q96S37 553 aa18.44■□□□□ 0.54
PRPF40B-208ENST00000548436 DDX50Q9BQ39 737 aaKnown RBP18.44■□□□□ 0.54
PRPF40B-208ENST00000548436 ADGRE3Q9BY15 652 aa18.44■□□□□ 0.54
PRPF40B-208ENST00000548436 HSFX1Q9UBD0 423 aa18.44■□□□□ 0.54
PRPF40B-208ENST00000548436 LHX3Q9UBR4 397 aa18.44■□□□□ 0.54
PRPF40B-208ENST00000548436 GIMAP2Q9UG22 337 aa18.44■□□□□ 0.54
PRPF40B-208ENST00000548436 FNDC3AQ9Y2H6 1198 aaKnown RBP18.44■□□□□ 0.54
PRPF40B-208ENST00000548436 PIP5K1BO14986 540 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 TBL1XO60907 577 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 RNASEH1O60930 286 aaKnown RBP18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 ECI2O75521 394 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 SOD2P04179 222 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 LYNP07948 512 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 PSMD8P48556 350 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 XIAPP98170 497 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 CTSL3PQ5NE16 218 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 KANK2Q63ZY3 851 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 FAM43BQ6ZT52 329 aaPredicted RBP18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 FBXO39Q8N4B4 442 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 CARNMT1Q8N4J0 409 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 TTC30BQ8N4P2 665 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 ZNF296Q8WUU4 475 aaPredicted RBP18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 FUBP1Q96AE4 644 aaKnown RBP18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 TUBB1Q9H4B7 451 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 STOML2Q9UJZ1 356 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 NPEPPSL1A6NEC2 478 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 H0Y626 953 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 PEX1O43933 1283 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 NIPSNAP2O75323 286 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 MBL2P11226 248 aaPredicted RBP18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 UQCRBP14927 111 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 GPX3P22352 226 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 ATP4BP51164 291 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 ATP6V0D1P61421 351 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 CLCQ05315 142 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 GEN1Q17RS7 908 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 GRAMD1BQ3KR37 738 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 TPGS2Q68CL5 300 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 ZFP1Q6P2D0 407 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 HERC6Q8IVU3 1022 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 BCAP29Q9UHQ4 241 aa18.43■□□□□ 0.54
PRPF40B-208ENST00000548436 NRP2O60462 931 aa18.42■□□□□ 0.54
PRPF40B-208ENST00000548436 TSPAN12O95859 305 aa18.42■□□□□ 0.54
PRPF40B-208ENST00000548436 PKMP14618 531 aaKnown RBP18.42■□□□□ 0.54
PRPF40B-208ENST00000548436 SMAD3P84022 425 aaKnown RBP18.42■□□□□ 0.54
PRPF40B-208ENST00000548436 ZXDBP98169 803 aa18.42■□□□□ 0.54
PRPF40B-208ENST00000548436 TWF1Q12792 350 aa18.42■□□□□ 0.54
PRPF40B-208ENST00000548436 GRB7Q14451 532 aa18.42■□□□□ 0.54
PRPF40B-208ENST00000548436 ZRANB3Q5FWF4 1079 aa18.42■□□□□ 0.54
PRPF40B-208ENST00000548436 DNAJB7Q7Z6W7 309 aaPredicted RBP18.42■□□□□ 0.54
PRPF40B-208ENST00000548436 PHYKPLQ8IUZ5 450 aa18.42■□□□□ 0.54
PRPF40B-208ENST00000548436 LILRA2Q8N149 483 aa18.42■□□□□ 0.54
PRPF40B-208ENST00000548436 SIDT2Q8NBJ9 832 aaKnown RBP18.42■□□□□ 0.54
PRPF40B-208ENST00000548436 PHC3Q8NDX5 983 aa18.42■□□□□ 0.54
PRPF40B-208ENST00000548436 DEFB118Q96PH6 123 aa18.42■□□□□ 0.54
PRPF40B-208ENST00000548436 TUBGCP5Q96RT8 1024 aa18.42■□□□□ 0.54
PRPF40B-208ENST00000548436 FEM1AQ9BSK4 669 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms