RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 ITGALP20701 1170 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 MAGEA3P43357 314 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 ARRB1P49407 418 aaPredicted RBP17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 ITGA8P53708 1063 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 SESN2P58004 480 aaPredicted RBP17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 INPP5AQ14642 412 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 LPAL2Q16609 132 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 HIF1AQ16665 826 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 TSTD2Q5T7W7 516 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 LYPLAL1Q5VWZ2 237 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 GCNT7Q6ZNI0 430 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 Q6ZSR6 202 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 PTAR1Q7Z6K3 402 aaPredicted RBP17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 LMNTD2Q8IXW0 634 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 OR4K2Q8NGD2 314 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 SCG3Q8WXD2 468 aaKnown RBP17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 SEC14L1Q92503 715 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 HIC2Q96JB3 615 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 BMFQ96LC9 184 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 SLC6A18Q96N87 628 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 LRRC1Q9BTT6 524 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 APOOQ9BUR5 198 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 KIFC1Q9BW19 673 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 TEX101Q9BY14 249 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 RMI1Q9H9A7 625 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 CAPN10Q9HC96 672 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 MTRF1LQ9UGC7 380 aaKnown RBP17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 SOX13Q9UN79 622 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 ANKRD6Q9Y2G4 727 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 ARL5AQ9Y689 179 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 FAM237BA0A1B0GVD1 139 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 H3BM21 787 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 ARHGAP33O14559 1287 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 KRT37O76014 449 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 PCCBP05166 539 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 POLBP06746 335 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 RALBP11234 206 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 TPH1P17752 444 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 GM2AP17900 193 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 SDHBP21912 280 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 IGFALSP35858 605 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 RPL21P46778 160 aaKnown RBP17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 ZNF140P52738 457 aaPredicted RBP17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 PRAMEP78395 509 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 SEMG2Q02383 582 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 ACVR1Q04771 509 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 ILF2Q12905 390 aaKnown RBP17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 CUL1Q13616 776 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 NFATC4Q14934 902 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 AARS2Q5JTZ9 985 aaKnown RBP17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 LDLRAP1Q5SW96 308 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 CERCAMQ5T4B2 595 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 CASC4Q6P4E1 433 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 CERS6Q6ZMG9 384 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 MACC1Q6ZN28 852 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 CENPUQ71F23 418 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 CAND1Q86VP6 1230 aaKnown RBP17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 PARGQ86W56 976 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 PHYKPLQ8IUZ5 450 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 IFT20Q8IY31 132 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 SDR16C5Q8N3Y7 309 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 GPR26Q8NDV2 337 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 TBATAQ96M53 351 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 RIOK2Q9BVS4 552 aaKnown RBP17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 TRIM31Q9BZY9 425 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 GPR27Q9NS67 375 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 TMEM74BQ9NUR3 256 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 SMOXQ9NWM0 555 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 VPS18Q9P253 973 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 SNX24Q9Y343 169 aa17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 TNRC6BQ9UPQ9 1833 aaKnown RBP17.42■□□□□ 0.38
CLSTN3-210ENST00000540931 SPTY2D1-AS1A0A0U1RR47 76 aa17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 KLHL33A6NCF5 533 aa17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 AURKAO14965 403 aa17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 TMEM63AO94886 807 aa17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 SLC4A1P02730 911 aa17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 GRIA1P42261 906 aa17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 CSNK1EP49674 416 aaKnown RBP17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 NXPH1P58417 271 aa17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 FAM182AQ5T1J6 154 aa17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 ANKRD22Q5VYY1 191 aa17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 AFTPHQ6ULP2 937 aa17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 ZNF534Q76KX8 674 aa17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 SNX20Q7Z614 316 aa17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 MPP5Q8N3R9 675 aa17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 EIF1ADQ8N9N8 165 aaKnown RBP17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 ZNF398Q8TD17 642 aa17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 ART4Q93070 314 aa17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 EID2BQ96D98 161 aa17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 CDKN2AIPNLQ96HQ2 116 aa17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 ZNF514Q96K75 400 aaPredicted RBP17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 WDR92Q96MX6 357 aa17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 TTC25Q96NG3 672 aa17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 IL26Q9NPH9 171 aa17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 MBNL1Q9NR56 388 aaKnown RBP17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 SEMA4GQ9NTN9 838 aa17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 VPS9D1Q9Y2B5 631 aa17.41■□□□□ 0.38
CLSTN3-210ENST00000540931 TCRBV7S3A2A0A539 114 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 POM121BA6NF01 834 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms