RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 S1PR5Q9H228 398 aa12.22□□□□□ -0.45
AP003559.1-201ENST00000540906 INTS10Q9NVR2 710 aaKnown RBP12.22□□□□□ -0.45
AP003559.1-201ENST00000540906 THAP1Q9NVV9 213 aa12.22□□□□□ -0.45
AP003559.1-201ENST00000540906 GTSE1Q9NYZ3 720 aa12.22□□□□□ -0.45
AP003559.1-201ENST00000540906 GDE1Q9NZC3 331 aa12.22□□□□□ -0.45
AP003559.1-201ENST00000540906 B4GALT6Q9UBX8 382 aa12.22□□□□□ -0.45
AP003559.1-201ENST00000540906 CDH7Q9ULB5 785 aa12.22□□□□□ -0.45
AP003559.1-201ENST00000540906 FAM50BQ9Y247 325 aa12.22□□□□□ -0.45
AP003559.1-201ENST00000540906 DNAJC16Q9Y2G8 782 aa12.22□□□□□ -0.45
AP003559.1-201ENST00000540906 PPIL1Q9Y3C6 166 aa12.22□□□□□ -0.45
AP003559.1-201ENST00000540906 PKP3Q9Y446 797 aa12.22□□□□□ -0.45
AP003559.1-201ENST00000540906 NDUFS3O75489 264 aa12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 SRP72O76094 671 aaKnown RBP12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 LTA4HP09960 611 aaKnown RBP12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 CHRM1P11229 460 aaPredicted RBP12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 OPRD1P41143 372 aa12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 ABCE1P61221 599 aaKnown RBP12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 PTSQ03393 145 aa12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 CHRNA6Q15825 494 aa12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 GALNTL6Q49A17 601 aa12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 ARSIQ5FYB1 569 aa12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 PARM1Q6UWI2 310 aa12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 GDPD4Q6W3E5 623 aa12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 CCDC121Q6ZUS5 278 aa12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 RPS27LQ71UM5 84 aaKnown RBP12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 YTHDF3Q7Z739 585 aaKnown RBP12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 TBC1D1Q86TI0 1168 aaPredicted RBP12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 LKAAEAR1Q8TD35 194 aa12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 SCRN2Q96FV2 425 aa12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 TSPAN17Q96FV3 270 aa12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 LYSMD1Q96S90 227 aa12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 EBF4Q9BQW3 602 aa12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 TRIM55Q9BYV6 548 aa12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 BRD9Q9H8M2 597 aa12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 ELOVL2Q9NXB9 296 aa12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 SLC27A6Q9Y2P4 619 aa12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 PRSS21Q9Y6M0 314 aa12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 USH1CQ9Y6N9 552 aa12.21□□□□□ -0.45
AP003559.1-201ENST00000540906 TRIM13O60858 407 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 RHOBTB1O94844 696 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 TGDSO95455 350 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 PRAMEF1O95521 474 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 NFATC1O95644 943 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 TROVE2P10155 538 aaKnown RBP eCLIP12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 CD1DP15813 335 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 TIMP2P16035 220 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 ZNF37AP17032 561 aaPredicted RBP12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 CORO7P57737 925 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 PFKPQ01813 784 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 CACNG1Q06432 222 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 OR4D1Q15615 310 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 LACTB2Q53H82 288 aaPredicted RBP12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 PAQR3Q6TCH7 311 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 ISCA2Q86U28 154 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 SERPINA9Q86WD7 417 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 LSMEM2Q8N112 164 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 ZNF557Q8N988 423 aaPredicted RBP12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 SIDT2Q8NBJ9 832 aaKnown RBP12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 GABPB2Q8TAK5 448 aaPredicted RBP12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 FGF14Q92915 247 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 GPR21Q99679 349 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 HEPHQ9BQS7 1158 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 ABCG8Q9H221 673 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 P2RY12Q9H244 342 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 MRPL46Q9H2W6 279 aaKnown RBP12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 KDM4CQ9H3R0 1056 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 ALG9Q9H6U8 611 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 SARDHQ9UL12 918 aa12.21□□□□□ -0.46
AP003559.1-201ENST00000540906 DENND4AQ7Z401 1863 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 EYSQ5T1H1 3165 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 ZNF195O14628 629 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 KIAA0754O94854 1291 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 PKMP14618 531 aaKnown RBP12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 TFEBP19484 476 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 MPSTP25325 297 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 ARFIP2P53365 341 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 NAGLUP54802 743 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 FCHO2Q0JRZ9 810 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 TSNAXIP1Q2TAA8 658 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 LIPMQ5VYY2 423 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 TPRG1Q6ZUI0 275 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 TTC7BQ86TV6 843 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 ALYREFQ86V81 257 aaKnown RBP12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 CRLF3Q8IUI8 442 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 CNPY4Q8N129 248 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 ZNF781Q8N8C0 355 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 WFIKKN2Q8TEU8 576 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 ERP27Q96DN0 273 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 ZNF641Q96N77 438 aaPredicted RBP12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 TSNARE1Q96NA8 513 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 TCF12Q99081 682 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 MRPL57Q9BQC6 102 aaKnown RBP12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 SHCBP1LQ9BZQ2 653 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 ASB8Q9H765 288 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 ZFP14Q9HCL3 533 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 CYP4F12Q9HCS2 524 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 MBD1Q9UIS9 605 aaPredicted RBP12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 TMPRSS11EQ9UL52 423 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 XIRP2A4UGR9 3374 aa12.2□□□□□ -0.46
AP003559.1-201ENST00000540906 TRBV5-4A0A0C4DH59 114 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms