RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 CHST15Q7LFX5 561 aaPredicted RBP14.06□□□□□ -0.16
USP3-204ENST00000540797 GRASPQ7Z6J2 395 aaPredicted RBP14.06□□□□□ -0.16
USP3-204ENST00000540797 TRABD2AQ86V40 505 aa14.06□□□□□ -0.16
USP3-204ENST00000540797 TMEM139Q8IV31 216 aa14.06□□□□□ -0.16
USP3-204ENST00000540797 FUKQ8N0W3 1084 aa14.06□□□□□ -0.16
USP3-204ENST00000540797 HIST1H2ACQ93077 130 aa14.06□□□□□ -0.16
USP3-204ENST00000540797 PANX1Q96RD7 426 aa14.06□□□□□ -0.16
USP3-204ENST00000540797 RAD9AQ99638 391 aa14.06□□□□□ -0.16
USP3-204ENST00000540797 TMEM79Q9BSE2 394 aa14.06□□□□□ -0.16
USP3-204ENST00000540797 INSL5Q9Y5Q6 135 aa14.06□□□□□ -0.16
USP3-204ENST00000540797 TM7SF2O76062 418 aa14.06□□□□□ -0.16
USP3-204ENST00000540797 SCNN1AP37088 669 aa14.06□□□□□ -0.16
USP3-204ENST00000540797 MRPS35P82673 323 aaKnown RBP14.06□□□□□ -0.16
USP3-204ENST00000540797 WASHC2DQ5SRD0 308 aa14.06□□□□□ -0.16
USP3-204ENST00000540797 TMEM220Q6QAJ8 160 aa14.06□□□□□ -0.16
USP3-204ENST00000540797 TMEM110Q86TL2 294 aa14.06□□□□□ -0.16
USP3-204ENST00000540797 OSTM1Q86WC4 334 aa14.06□□□□□ -0.16
USP3-204ENST00000540797 DNAJB14Q8TBM8 379 aa14.06□□□□□ -0.16
USP3-204ENST00000540797 PXYLP1Q8TE99 480 aa14.06□□□□□ -0.16
USP3-204ENST00000540797 HMGB4Q8WW32 186 aa14.06□□□□□ -0.16
USP3-204ENST00000540797 PCYT2Q99447 389 aa14.06□□□□□ -0.16
USP3-204ENST00000540797 RIBC2Q9H4K1 309 aa14.06□□□□□ -0.16
USP3-204ENST00000540797 TDP1Q9NUW8 608 aa14.06□□□□□ -0.16
USP3-204ENST00000540797 TRAF6Q9Y4K3 522 aa14.06□□□□□ -0.16
USP3-204ENST00000540797 MAGEA13PA6NCF6 341 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 CHURC1-FNTBB4DL54 471 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 FAM20BO75063 409 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 LYPLA1O75608 230 aaPredicted RBP14.05□□□□□ -0.16
USP3-204ENST00000540797 STK16O75716 305 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 EPHA3P29320 983 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.05□□□□□ -0.163e-7■■■■□ 20.8
USP3-204ENST00000540797 TAF1AQ15573 450 aaPredicted RBP14.05□□□□□ -0.16
USP3-204ENST00000540797 LRRC73Q5JTD7 316 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 ANXA8L1Q5VT79 327 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 ZFP1Q6P2D0 407 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 CUZD1Q86UP6 607 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 SERINC5Q86VE9 423 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 FAM20CQ8IXL6 584 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 ZNF276Q8N554 614 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 MECRQ9BV79 373 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 ANAPC2Q9UJX6 822 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 SCML2Q9UQR0 700 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 SCAMP1O15126 338 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 CSF2RAP15509 400 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 CDH3P22223 829 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 NDUFA9Q16795 377 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 ESRP1Q6NXG1 681 aaKnown RBP14.05□□□□□ -0.16
USP3-204ENST00000540797 FBXL22Q6P050 247 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 GPR141Q7Z602 305 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 EMID1Q96A84 441 aaPredicted RBP14.05□□□□□ -0.16
USP3-204ENST00000540797 BCO2Q9BYV7 579 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 PSMD13Q9UNM6 376 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 FAM155BO75949 473 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 RPIAP49247 311 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 KPNB1Q14974 876 aaKnown RBP14.05□□□□□ -0.16
USP3-204ENST00000540797 ALG11Q2TAA5 492 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 LCN9Q8WX39 176 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 ATG10Q9H0Y0 220 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 BATF3Q9NR55 127 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 AJAP1Q9UKB5 411 aaPredicted RBP14.05□□□□□ -0.16
USP3-204ENST00000540797 POLR3HQ9Y535 204 aaPredicted RBP14.05□□□□□ -0.16
USP3-204ENST00000540797 HAPLN1P10915 354 aaPredicted RBP14.05□□□□□ -0.16
USP3-204ENST00000540797 COX4I1P13073 169 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 NMBRP28336 390 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 CMPK1P30085 196 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 NEK2P51955 445 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 HADHBP55084 474 aaKnown RBP14.05□□□□□ -0.16
USP3-204ENST00000540797 ANKRD22Q5VYY1 191 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 ZDHHC13Q8IUH4 622 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 BPIFB1Q8TDL5 484 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 NXNL1Q96CM4 212 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 APOL4Q9BPW4 351 aa14.05□□□□□ -0.16
USP3-204ENST00000540797 GTPBP1O00178 669 aaKnown RBP14.04□□□□□ -0.16
USP3-204ENST00000540797 CCDC159P0C7I6 412 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 IDO1P14902 403 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 JAK1P23458 1154 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 TEAD2Q15562 447 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 UBXN11Q5T124 520 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 FAAH2Q6GMR7 532 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 KIAA0408Q6ZU52 694 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 PIGVQ9NUD9 493 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 CIDEBQ9UHD4 219 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 SALL4Q9UJQ4 1053 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 RPS6KA6Q9UK32 745 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 ILVBLA1L0T0 632 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 ARHGEF9O43307 516 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 COMMD2Q86X83 199 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 IGSF21Q96ID5 467 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 ITCHQ96J02 903 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 ZNF490Q9ULM2 529 aaPredicted RBP14.04□□□□□ -0.16
USP3-204ENST00000540797 PCDHGA4Q9Y5G9 962 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 GRIN2DO15399 1336 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 TOPAZ1Q8N9V7 1692 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 MTMR11A4FU01 709 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 IQCF5A8MTL0 148 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 RGS5O15539 181 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 IPO13O94829 963 aaKnown RBP14.04□□□□□ -0.16
USP3-204ENST00000540797 GNSP15586 552 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 KCNQ1P51787 676 aa14.04□□□□□ -0.16
USP3-204ENST00000540797 NUP107P57740 925 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms