RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 ACTR3BQ9P1U1 418 aa20.24■□□□□ 0.83
TMEM260-203ENST00000539559 J3KR12 359 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 KCNH1O95259 989 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 S1PR4O95977 384 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 C21orf59P57076 290 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 NFYCQ13952 458 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 DCBLD1Q8N8Z6 715 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 FEM1CQ96JP0 617 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 GAD1Q99259 594 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 HOPXQ9BPY8 73 aaPredicted RBP20.23■□□□□ 0.83
TMEM260-203ENST00000539559 TMLHEQ9NVH6 421 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 MIOSQ9NXC5 875 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 SH3BP1Q9Y3L3 701 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 AZIN1O14977 448 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 CAPGP40121 348 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 SERPINH1P50454 418 aaKnown RBP20.23■□□□□ 0.83
TMEM260-203ENST00000539559 CACNB2Q08289 660 aaPredicted RBP20.23■□□□□ 0.83
TMEM260-203ENST00000539559 CCL14Q16627 93 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 LDLRAP1Q5SW96 308 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 ANKRD26P1Q6NSI1 321 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 TMEM214Q6NUQ4 689 aaKnown RBP20.23■□□□□ 0.83
TMEM260-203ENST00000539559 ZNF549Q6P9A3 640 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 SPRED1Q7Z699 444 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 PACRGLQ8N7B6 248 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 ADAMTS16Q8TE57 1224 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 TBATAQ96M53 351 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 C1orf50Q9BV19 199 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 SEZ6LQ9BYH1 1024 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 ZFYVE28Q9HCC9 887 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 PFDN4Q9NQP4 134 aa20.23■□□□□ 0.83
TMEM260-203ENST00000539559 SMPD3Q9NY59 655 aaPredicted RBP20.23■□□□□ 0.83
TMEM260-203ENST00000539559 ASPDHA6ND91 283 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 HSD17B1P14061 328 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 DCKP27707 260 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 RPS9P46781 194 aaKnown RBP20.22■□□□□ 0.83
TMEM260-203ENST00000539559 BMXP51813 675 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 LIPEQ05469 1076 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 C16orf87Q6PH81 154 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 KDELC1Q6UW63 502 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 ZNF354CQ86Y25 554 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 LRRC43Q8N309 656 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 MINDY1Q8N5J2 469 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 TMEM125Q96AQ2 219 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 L3HYPDHQ96EM0 354 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 PPP1R10Q96QC0 940 aaKnown RBP20.22■□□□□ 0.83
TMEM260-203ENST00000539559 SLC30A3Q99726 388 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 TRIM15Q9C019 465 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 ALG2Q9H553 416 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 IFT80Q9P2H3 777 aaPredicted RBP20.22■□□□□ 0.83
TMEM260-203ENST00000539559 PTBP2Q9UKA9 531 aaKnown RBP20.22■□□□□ 0.83
TMEM260-203ENST00000539559 CDH7Q9ULB5 785 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 PCDHA9Q9Y5H5 950 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 K7EPI3 171 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 FUCA1P04066 466 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 PCNAP12004 261 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 PRDX3P30048 256 aaKnown RBP20.22■□□□□ 0.83
TMEM260-203ENST00000539559 CCR1P32246 355 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 RFC2P35250 354 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 PLIN5Q00G26 463 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 SLC10A7Q0GE19 358 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 KIAA0408Q6ZU52 694 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 BPIFB6Q8NFQ5 453 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 PTCD2Q8WV60 388 aaKnown RBP20.22■□□□□ 0.83
TMEM260-203ENST00000539559 CASP10Q92851 521 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 ESAMQ96AP7 390 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 TSPAN17Q96FV3 270 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 FANCEQ9HB96 536 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 MRM3Q9HC36 420 aaKnown RBP20.22■□□□□ 0.83
TMEM260-203ENST00000539559 SELENONQ9NZV5 590 aa20.22■□□□□ 0.83
TMEM260-203ENST00000539559 FNDC1Q4ZHG4 1894 aaPredicted RBP20.22■□□□□ 0.83
TMEM260-203ENST00000539559 NCF1BA6NI72 391 aaPredicted RBP20.21■□□□□ 0.83
TMEM260-203ENST00000539559 NCF1CA8MVU1 366 aaPredicted RBP20.21■□□□□ 0.83
TMEM260-203ENST00000539559 ZNF189O75820 626 aaPredicted RBP20.21■□□□□ 0.83
TMEM260-203ENST00000539559 NCF1P14598 390 aaPredicted RBP20.21■□□□□ 0.83
TMEM260-203ENST00000539559 CD1DP15813 335 aa20.21■□□□□ 0.83
TMEM260-203ENST00000539559 CPT1AP50416 773 aa20.21■□□□□ 0.83
TMEM260-203ENST00000539559 GALNT1Q10472 559 aaPredicted RBP20.21■□□□□ 0.83
TMEM260-203ENST00000539559 MFSD10Q14728 455 aa20.21■□□□□ 0.83
TMEM260-203ENST00000539559 TMTC4Q5T4D3 741 aa20.21■□□□□ 0.83
TMEM260-203ENST00000539559 SMARCD1Q96GM5 515 aa20.21■□□□□ 0.83
TMEM260-203ENST00000539559 MUS81Q96NY9 551 aa20.21■□□□□ 0.83
TMEM260-203ENST00000539559 KCTD14Q9BQ13 255 aaPredicted RBP20.21■□□□□ 0.83
TMEM260-203ENST00000539559 PRKD2Q9BZL6 878 aa20.21■□□□□ 0.83
TMEM260-203ENST00000539559 INTS7Q9NVH2 962 aaKnown RBP20.21■□□□□ 0.83
TMEM260-203ENST00000539559 MIA3Q5JRA6 1907 aa20.21■□□□□ 0.83
TMEM260-203ENST00000539559 SMIM35A0A1B0GVV1 85 aa20.21■□□□□ 0.83
TMEM260-203ENST00000539559 BBIP1A8MTZ0 92 aa20.21■□□□□ 0.83
TMEM260-203ENST00000539559 ATP4BP51164 291 aa20.21■□□□□ 0.83
TMEM260-203ENST00000539559 RALGPS2Q86X27 583 aaPredicted RBP20.21■□□□□ 0.83
TMEM260-203ENST00000539559 ZBTB8BQ8NAP8 495 aaPredicted RBP20.21■□□□□ 0.83
TMEM260-203ENST00000539559 SOCS4Q8WXH5 440 aa20.21■□□□□ 0.83
TMEM260-203ENST00000539559 RNF145Q96MT1 663 aa20.21■□□□□ 0.83
TMEM260-203ENST00000539559 AP5M1Q9H0R1 490 aa20.21■□□□□ 0.83
TMEM260-203ENST00000539559 INIPQ9NRY2 104 aa20.21■□□□□ 0.83
TMEM260-203ENST00000539559 DOCK3Q8IZD9 2030 aa20.21■□□□□ 0.83
TMEM260-203ENST00000539559 MBLAC1A4D2B0 266 aaPredicted RBP20.2■□□□□ 0.82
TMEM260-203ENST00000539559 TRIM64A6NGJ6 449 aa20.2■□□□□ 0.82
TMEM260-203ENST00000539559 OCM2P0CE71 109 aa20.2■□□□□ 0.82
TMEM260-203ENST00000539559 OCMP0CE72 109 aaPredicted RBP20.2■□□□□ 0.82
TMEM260-203ENST00000539559 MTHFD2P13995 350 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms