RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 TSHRP16473 764 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 POU3F2P20265 443 aaPredicted RBP12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 ARSDP51689 593 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 RPS21P63220 83 aaKnown RBP12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 GNA12Q03113 381 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 CCDC15Q0P6D6 951 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 XRCC4Q13426 336 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 TIGD7Q6NT04 549 aaPredicted RBP12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 ZNF783Q6ZMS7 281 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 UMODL1-AS1Q8N2C9 162 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 SDR16C5Q8N3Y7 309 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 NPWQ8N729 165 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 NETO2Q8NC67 525 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 SPATA4Q8NEY3 305 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 GRK7Q8WTQ7 553 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 TFB1MQ8WVM0 346 aaKnown RBP12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 ATG4AQ8WYN0 398 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 CCDC74AQ96AQ1 378 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 RUNDC3BQ96NL0 473 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 TMEM74Q96NL1 305 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 SLC39A8Q9C0K1 460 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 BRD8Q9H0E9 1235 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 SYNDIG1Q9H7V2 258 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 ATP13A1Q9HD20 1204 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 NDFIP2Q9NV92 336 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 DTLQ9NZJ0 730 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 APOBEC3BQ9UH17 382 aaKnown RBP12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 IPO11Q9UI26 975 aaKnown RBP12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 SLC25A13Q9UJS0 675 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 R3HDM2Q9Y2K5 976 aaKnown RBP12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 HIVEP3Q5T1R4 2406 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 CFAP69A5D8W1 941 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 HACD1B0YJ81 288 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 K7ERQ8 282 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 PDE2AO00408 941 aaPredicted RBP12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 SMAD6O43541 496 aaKnown RBP12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 LIASO43766 372 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 RPLP0P05388 317 aaKnown RBP12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 ANXA6P08133 673 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 GARSP41250 739 aaKnown RBP12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 PAPOLAP51003 745 aaKnown RBP12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 GALNT2Q10471 571 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 ARSIQ5FYB1 569 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 KIAA1161Q6NSJ0 714 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 ESRP1Q6NXG1 681 aaKnown RBP12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 CCDC137Q6PK04 289 aaKnown RBP12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 LRRC49Q8IUZ0 686 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 CCDC13Q8IYE1 715 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 PHACTR4Q8IZ21 702 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 BBS5Q8N3I7 341 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 PRELID2Q8N945 189 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 KYQ8NBH2 561 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 OR7D4Q8NG98 312 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 NKD1Q969G9 470 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 TMEM159Q96B96 161 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 HMCESQ96FZ2 354 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 FEM1CQ96JP0 617 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 KRT12Q99456 494 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 B3GNT4Q9C0J1 378 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 DDX47Q9H0S4 455 aaKnown RBP12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 LRRN3Q9H3W5 708 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 ZNF71Q9NQZ8 489 aaPredicted RBP12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 HAUS2Q9NVX0 235 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 FEZ2Q9UHY8 353 aaPredicted RBP12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 DNPEPQ9ULA0 475 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 SRPK3Q9UPE1 567 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 TBC1D30Q9Y2I9 924 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 PCDHB11Q9Y5F2 797 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 FADS3Q9Y5Q0 445 aa12.51□□□□□ -0.41
CLSTN3-208ENST00000538933 ZFHX3Q15911 3703 aa12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 A0A0D9SEW6 157 aa12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 FPGTO14772 594 aa12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 KCNN4O15554 427 aa12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 ZNF821O75541 412 aaPredicted RBP12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 GAS8O95995 478 aa12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 PRNPP04156 253 aa12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 ITGB7P26010 798 aa12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 CD82P27701 267 aa12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 ACVRL1P37023 503 aa12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 COILP38432 576 aaPredicted RBP12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 FNTAP49354 379 aa12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 SLC10A2Q12908 348 aaPredicted RBP12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 PPP1R7Q15435 360 aa12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 SIX1Q15475 284 aaPredicted RBP12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 TMPRSS9Q7Z410 1059 aa12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 ARHGAP12Q8IWW6 846 aa12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 ARL10Q8N8L6 244 aa12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 CCDC89Q8N998 374 aa12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 ASB12Q8WXK4 309 aa12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 ARHGEF2Q92974 986 aaKnown RBP12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 CENPTQ96BT3 561 aa12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 HDAC11Q96DB2 347 aa12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 QKIQ96PU8 341 aaKnown RBP eCLIP12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 C2orf49Q9BVC5 232 aaPredicted RBP12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 CPEB1Q9BZB8 566 aaKnown RBP12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 LRRC19Q9H756 370 aa12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 L2HGDHQ9H9P8 463 aa12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 GULP1Q9UBP9 304 aa12.5□□□□□ -0.41
CLSTN3-208ENST00000538933 TACC2O95359 2948 aa12.49□□□□□ -0.41
CLSTN3-208ENST00000538933 ARHGEF17Q96PE2 2063 aaPredicted RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms