RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 PRSS23O95084 383 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 PIGNO95427 931 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 VNN1O95497 513 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 NDST3O95803 873 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 CRYZL1O95825 349 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 LDLRP01130 860 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 APOA1P02647 267 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 ABCB1P08183 1280 aaPredicted RBP6.69□□□□□ -1.34
USP28-207ENST00000538475 NFICP08651 508 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 KRT19P08727 400 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 CKMT2P17540 419 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 MATN1P21941 496 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 TCEA1P23193 301 aaKnown RBP6.69□□□□□ -1.34
USP28-207ENST00000538475 CRHBPP24387 322 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 IL1R2P27930 398 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 RRM2P31350 389 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 RFC2P35250 354 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 NDST1P52848 882 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 PLA2G16P53816 162 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 RAD23AP54725 363 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 CDH6P55285 790 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 EEFSECP57772 596 aaKnown RBP6.69□□□□□ -1.34
USP28-207ENST00000538475 CXCR4P61073 352 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 RAD51Q06609 339 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 DMPKQ09013 629 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 BFSP2Q13515 415 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 FASTKQ14296 549 aaKnown RBP6.69□□□□□ -1.34
USP28-207ENST00000538475 GALNT3Q14435 633 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 FXNQ16595 210 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 NFE2Q16621 373 aaPredicted RBP6.69□□□□□ -1.34
USP28-207ENST00000538475 ANO4Q32M45 955 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 INAVAQ3KP66 663 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 ZC3H12BQ5HYM0 836 aaKnown RBP6.69□□□□□ -1.34
USP28-207ENST00000538475 RBM20Q5T481 1227 aaKnown RBP6.69□□□□□ -1.34
USP28-207ENST00000538475 REP15Q6BDI9 236 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 LRRC8EQ6NSJ5 796 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 LLGL2Q6P1M3 1020 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 SLC39A4Q6P5W5 647 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 TRMT10BQ6PF06 316 aaKnown RBP6.69□□□□□ -1.34
USP28-207ENST00000538475 IDO2Q6ZQW0 420 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 USP43Q70EL4 1123 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 TAS2R42Q7RTR8 314 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 HDDC2Q7Z4H3 204 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 SLC51BQ86UW2 128 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 FAM160B2Q86V87 743 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 PROSER1Q86XN7 944 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 WDR49Q8IV35 697 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 PSTKQ8IV42 348 aaKnown RBP6.69□□□□□ -1.34
USP28-207ENST00000538475 SULF2Q8IWU5 870 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 DDIASQ8IXT1 998 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 C8orf59Q8N0T1 100 aaPredicted RBP6.69□□□□□ -1.34
USP28-207ENST00000538475 ARFGAP1Q8N6T3 406 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 KDM1BQ8NB78 822 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 OR7A2PQ8NGA2 310 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 CYP2W1Q8TAV3 490 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 CXorf38Q8TB03 319 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 SETD6Q8TBK2 473 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 URGCPQ8TCY9 931 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 BLOC1S5Q8TDH9 187 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 STYXQ8WUJ0 223 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 CANT1Q8WVQ1 401 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 USP13Q92995 863 aaPredicted RBP6.69□□□□□ -1.34
USP28-207ENST00000538475 CERS2Q96G23 380 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 ELMO2Q96JJ3 720 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 QKIQ96PU8 341 aaKnown RBP eCLIP6.69□□□□□ -1.34
USP28-207ENST00000538475 TWNKQ96RR1 684 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 CALN1Q9BXU9 219 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 GON7Q9BXV9 100 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 ACE2Q9BYF1 805 aaPredicted RBP6.69□□□□□ -1.34
USP28-207ENST00000538475 TRIM54Q9BYV2 358 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 CLPBQ9H078 707 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 TP63Q9H3D4 680 aaPredicted RBP6.69□□□□□ -1.34
USP28-207ENST00000538475 RNPEPQ9H4A4 650 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 CCDC86Q9H6F5 360 aaKnown RBP6.69□□□□□ -1.34
USP28-207ENST00000538475 MEAF6Q9HAF1 191 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 FANCEQ9HB96 536 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 CCNB1IP1Q9NPC3 277 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 FAM105AQ9NUU6 356 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 FBXO28Q9NVF7 368 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 MTMR10Q9NXD2 777 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 DTLQ9NZJ0 730 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 DNMT3BQ9UBC3 853 aaKnown RBP6.69□□□□□ -1.34
USP28-207ENST00000538475 NARFQ9UHQ1 456 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 ZNF229Q9UJW7 825 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 TLK1Q9UKI8 766 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 POU2F3Q9UKI9 436 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 AGO2Q9UKV8 859 aaKnown RBP6.69□□□□□ -1.34
USP28-207ENST00000538475 STAP1Q9ULZ2 295 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 ST14Q9Y5Y6 855 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 UBIAD1Q9Y5Z9 338 aa6.69□□□□□ -1.34
USP28-207ENST00000538475 ZNF638Q14966 1978 aaKnown RBP6.69□□□□□ -1.34
USP28-207ENST00000538475 SHROOM3Q8TF72 1996 aa6.68□□□□□ -1.34
USP28-207ENST00000538475 A0A096LPK6 155 aa6.68□□□□□ -1.34
USP28-207ENST00000538475 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.68□□□□□ -1.34
USP28-207ENST00000538475 KRTAP9-6A0A140TA67 174 aa6.68□□□□□ -1.34
USP28-207ENST00000538475 LOC105371267A0A1B0GV96 52 aa6.68□□□□□ -1.34
USP28-207ENST00000538475 CCDC78A2IDD5 438 aa6.68□□□□□ -1.34
USP28-207ENST00000538475 PRORSD1PA6NEY8 169 aa6.68□□□□□ -1.34
USP28-207ENST00000538475 WTIPA6NIX2 430 aaPredicted RBP6.68□□□□□ -1.34
USP28-207ENST00000538475 ZNF99A8MXY4 864 aaPredicted RBP6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms