RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 APOFQ13790 326 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 KRT81Q14533 505 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 CLCA4Q14CN2 919 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 NAB2Q15742 525 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 MAPK6Q16659 721 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 ZNF827Q17R98 1081 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 RNF151Q2KHN1 245 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 AAK1Q2M2I8 961 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 FAM98BQ52LJ0 330 aaKnown RBP5.51□□□□□ -1.53
CD44-236ENST00000533222 RUNDC3AQ59EK9 446 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 YIF1BQ5BJH7 314 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 ZNF569Q5MCW4 686 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 FAM91A1Q658Y4 838 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 KCNK18Q7Z418 384 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 SETD3Q86TU7 594 aaPredicted RBP5.51□□□□□ -1.53
CD44-236ENST00000533222 FJX1Q86VR8 437 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 RAVER1Q8IY67 606 aaKnown RBP5.51□□□□□ -1.53
CD44-236ENST00000533222 PCDH20Q8N6Y1 951 aaKnown RBP5.51□□□□□ -1.53
CD44-236ENST00000533222 CDYL2Q8N8U2 506 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 TC2NQ8N9U0 490 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 C11orf65Q8NCR3 313 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 CATSPER1Q8NEC5 780 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 C1orf162Q8NEQ5 155 aaPredicted RBP5.51□□□□□ -1.53
CD44-236ENST00000533222 ENGASEQ8NFI3 743 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 OR56B2PQ8NGI1 322 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 OR14K1Q8NGZ2 314 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 GOT1L1Q8NHS2 421 aaPredicted RBP5.51□□□□□ -1.53
CD44-236ENST00000533222 VANGL1Q8TAA9 524 aaPredicted RBP5.51□□□□□ -1.53
CD44-236ENST00000533222 METTL6Q8TCB7 284 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 KCNG4Q8TDN1 519 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 FAM172AQ8WUF8 416 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 DNAJA4Q8WW22 397 aaPredicted RBP5.51□□□□□ -1.53
CD44-236ENST00000533222 JPH3Q8WXH2 748 aaPredicted RBP5.51□□□□□ -1.53
CD44-236ENST00000533222 FIG4Q92562 907 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 LPGAT1Q92604 370 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 TANKQ92844 425 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 YIPF5Q969M3 257 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 FAM71F1Q96KD3 344 aaPredicted RBP5.51□□□□□ -1.53
CD44-236ENST00000533222 INPP4AQ96PE3 977 aaPredicted RBP5.51□□□□□ -1.53
CD44-236ENST00000533222 FAM111AQ96PZ2 611 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 EYA3Q99504 573 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 DOK1Q99704 481 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 PTPN18Q99952 460 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 NUDT16L1Q9BRJ7 211 aaKnown RBP5.51□□□□□ -1.53
CD44-236ENST00000533222 LLPHQ9BRT6 129 aaKnown RBP5.51□□□□□ -1.53
CD44-236ENST00000533222 TMEM79Q9BSE2 394 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.51□□□□□ -1.53
CD44-236ENST00000533222 MENTQ9BUN1 341 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 CDK19Q9BWU1 502 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 SENP6Q9GZR1 1112 aaPredicted RBP5.51□□□□□ -1.53
CD44-236ENST00000533222 SLC22A4Q9H015 551 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 PAIP1Q9H074 479 aaKnown RBP5.51□□□□□ -1.53
CD44-236ENST00000533222 RNF41Q9H4P4 317 aaPredicted RBP5.51□□□□□ -1.53
CD44-236ENST00000533222 SLITRK6Q9H5Y7 841 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 C19orf12Q9NSK7 152 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 ANKEF1Q9NU02 776 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 DNAJC28Q9NX36 388 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 NKX1-2Q9UD57 310 aaPredicted RBP5.51□□□□□ -1.53
CD44-236ENST00000533222 GIMAP2Q9UG22 337 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 SRRDQ9UH36 339 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 SAMHD1Q9Y3Z3 626 aaKnown RBP5.51□□□□□ -1.53
CD44-236ENST00000533222 PCDHGA9Q9Y5G4 932 aaKnown RBP5.51□□□□□ -1.53
CD44-236ENST00000533222 PCDHGA8Q9Y5G5 932 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 PCDHGA7Q9Y5G6 932 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 PCDHGA6Q9Y5G7 932 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 PCDHGA2Q9Y5H1 932 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 ZHX2Q9Y6X8 837 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 TNRQ92752 1358 aa5.51□□□□□ -1.53
CD44-236ENST00000533222 URB2Q14146 1524 aaKnown RBP5.5□□□□□ -1.53
CD44-236ENST00000533222 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.5□□□□□ -1.53
CD44-236ENST00000533222 GRID2IPA4D2P6 1211 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 ERVV-1B6SEH8 477 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 PLK4O00444 970 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 RIPK2O43353 540 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 CTNND1O60716 968 aaKnown RBP5.5□□□□□ -1.53
CD44-236ENST00000533222 MAGEC1O60732 1142 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 NOL3O60936 208 aaKnown RBP5.5□□□□□ -1.53
CD44-236ENST00000533222 PHF2O75151 1096 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 CBR3O75828 277 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 RHOBTB1O94844 696 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 KRT8P05787 483 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 MYL4P12829 197 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 GSPT1P15170 499 aaKnown RBP5.5□□□□□ -1.53
CD44-236ENST00000533222 LAG3P18627 525 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 ATF3P18847 181 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 CAPN3P20807 821 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 GIFP27352 417 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 EIF2S3P41091 472 aaKnown RBP5.5□□□□□ -1.53
CD44-236ENST00000533222 HTR2BP41595 481 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 SLC1A4P43007 532 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 GNPDA1P46926 289 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 ALDH3B2P48448 385 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 COPB1P53618 953 aaKnown RBP5.5□□□□□ -1.53
CD44-236ENST00000533222 GPX6P59796 221 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 IL1RL1Q01638 556 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 MYL5Q02045 173 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 CALCOCO2Q13137 446 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 SELENBP1Q13228 472 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 PLD1Q13393 1074 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 RAPSNQ13702 412 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms