RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 ZNF839A8K0R7 811 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 ANKRD66B4E2M5 251 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 CDC7O00311 574 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 PIP5K1BO14986 540 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 SH3BGRLO75368 114 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 E2F6O75461 281 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 SORBS2O94875 1100 aaKnown RBP10.12□□□□□ -0.79
MCF2-209ENST00000520602 PRAMEF1O95521 474 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 PBLDP30039 288 aaPredicted RBP10.12□□□□□ -0.79
MCF2-209ENST00000520602 GRIA3P42263 894 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 SAMD4BQ5PRF9 694 aaKnown RBP10.12□□□□□ -0.79
MCF2-209ENST00000520602 AMIGO2Q86SJ2 522 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.12□□□□□ -0.79
MCF2-209ENST00000520602 CASD1Q96PB1 797 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 KLQ9UEF7 1012 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 PRPF19Q9UMS4 504 aaKnown RBP10.12□□□□□ -0.79
MCF2-209ENST00000520602 CASQ2O14958 399 aaPredicted RBP10.12□□□□□ -0.79
MCF2-209ENST00000520602 STC2O76061 302 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 IL1BP01584 269 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 IMPDH1P20839 514 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 PEX2P28328 305 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 LEPRP48357 1165 aaKnown RBP10.12□□□□□ -0.79
MCF2-209ENST00000520602 THOP1P52888 689 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 ECT2LQ008S8 904 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 TAF1AQ15573 450 aaPredicted RBP10.12□□□□□ -0.79
MCF2-209ENST00000520602 DENND5AQ6IQ26 1287 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 RSPO2Q6UXX9 243 aaPredicted RBP10.12□□□□□ -0.79
MCF2-209ENST00000520602 GPRIN3Q6ZVF9 776 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 FIBCD1Q8N539 461 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 CLDN19Q8N6F1 224 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 PXYLP1Q8TE99 480 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 GANCQ8TET4 914 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 SLC39A13Q96H72 371 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 SLC39A3Q9BRY0 314 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 TMEM175Q9BSA9 504 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 BBS2Q9BXC9 721 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 SPAG4Q9NPE6 437 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 PAPPA2Q9BXP8 1791 aa10.12□□□□□ -0.79
MCF2-209ENST00000520602 CCDC154A6NI56 674 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 SLC25A14O95258 325 aaPredicted RBP10.11□□□□□ -0.79
MCF2-209ENST00000520602 UGT2B4P06133 528 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 XRCC1P18887 633 aaPredicted RBP10.11□□□□□ -0.79
MCF2-209ENST00000520602 CES1P23141 567 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 TMEM259Q4ZIN3 620 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 TBCELQ5QJ74 424 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 AAGABQ6PD74 315 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 ZBTB49Q6ZSB9 765 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 LYSMD3Q7Z3D4 306 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 SCML4Q8N228 414 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 LINC01599Q8WXQ3 324 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 ZNF599Q96NL3 588 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 KCNA7Q96RP8 456 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 SPATA16Q9BXB7 569 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 SMG9Q9H0W8 520 aaKnown RBP10.11□□□□□ -0.79
MCF2-209ENST00000520602 TLE6Q9H808 572 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 CAAP1Q9H8G2 361 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 ARL15Q9NXU5 204 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 EIF2B4Q9UI10 523 aaKnown RBP10.11□□□□□ -0.79
MCF2-209ENST00000520602 MOSPD1Q9UJG1 213 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 SUFUQ9UMX1 484 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 NUMBLQ9Y6R0 609 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 ANKRD12Q6UB98 2062 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 NEDD8-MDP1E9PL57 170 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 TRIM38O00635 465 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 PEX1O43933 1283 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 OR1I1O60431 355 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 PSMA4P25789 261 aaKnown RBP10.11□□□□□ -0.79
MCF2-209ENST00000520602 SLC6A4P31645 630 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 RAP1GDS1P52306 607 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 STC1P52823 247 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 SNRPD1P62314 119 aaKnown RBP10.11□□□□□ -0.79
MCF2-209ENST00000520602 PFKPQ01813 784 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 PLPP4Q5VZY2 271 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 BHLHA9Q7RTU4 235 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 FAM126BQ8IXS8 530 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 REM2Q8IYK8 340 aaPredicted RBP10.11□□□□□ -0.79
MCF2-209ENST00000520602 ACTRT2Q8TDY3 377 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 UCMAQ8WVF2 138 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 CYGBQ8WWM9 190 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 SNX19Q92543 992 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 PSKH2Q96QS6 385 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 FAM126AQ9BYI3 521 aaPredicted RBP10.11□□□□□ -0.79
MCF2-209ENST00000520602 PCDHAC1Q9H158 963 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 ELAC1Q9H777 363 aaKnown RBP10.11□□□□□ -0.79
MCF2-209ENST00000520602 MRM3Q9HC36 420 aaKnown RBP10.11□□□□□ -0.79
MCF2-209ENST00000520602 ZFP14Q9HCL3 533 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 PCDH10Q9P2E7 1040 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 OPTCQ9UBM4 332 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 AP4S1Q9Y587 144 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 FAM155AB1AL88 458 aaPredicted RBP10.11□□□□□ -0.79
MCF2-209ENST00000520602 TMEM189-UBE2V1I3L0A0 370 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 KDELR3O43731 214 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 NOL3O60936 208 aaKnown RBP10.11□□□□□ -0.79
MCF2-209ENST00000520602 SEC22BO75396 215 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 PAPSS2O95340 614 aaPredicted RBP10.11□□□□□ -0.79
MCF2-209ENST00000520602 LAG3P18627 525 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 OGNP20774 298 aaKnown RBP10.11□□□□□ -0.79
MCF2-209ENST00000520602 KCNA5P22460 613 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 HERVK_113P63132 956 aa10.11□□□□□ -0.79
MCF2-209ENST00000520602 DLG1Q12959 904 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms