RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 RPP40O75818 363 aaKnown RBP11.67□□□□□ -0.54
SYNPO-204ENST00000519664 OR4F21O95013 312 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 CST1P01037 141 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 DLDP09622 509 aaKnown RBP11.67□□□□□ -0.54
SYNPO-204ENST00000519664 ZNF132P52740 706 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 HK2P52789 917 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 HPCAP84074 193 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 GNA12Q03113 381 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 PPP1R8Q12972 351 aaKnown RBP11.67□□□□□ -0.54
SYNPO-204ENST00000519664 MAD2L1Q13257 205 aaPredicted RBP11.67□□□□□ -0.54
SYNPO-204ENST00000519664 SPIDRQ14159 915 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 ZNF697Q5TEC3 545 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 ADAMTSL2Q86TH1 951 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 PIM3Q86V86 326 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 HEATR4Q86WZ0 1026 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 RASAL3Q86YV0 1011 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 CCDC103Q8IW40 242 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 STX19Q8N4C7 294 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 CBR4Q8N4T8 237 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 C2orf73Q8N5S3 287 aaPredicted RBP11.67□□□□□ -0.54
SYNPO-204ENST00000519664 UBR7Q8N806 425 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 C6orf62Q9GZU0 229 aaPredicted RBP11.67□□□□□ -0.54
SYNPO-204ENST00000519664 DNAJC28Q9NX36 388 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 GIMAP2Q9UG22 337 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 PRKAG3Q9UGI9 489 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 FETUBQ9UGM5 382 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 ZDHHC2Q9UIJ5 367 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 ZFP37Q9Y6Q3 630 aaPredicted RBP11.67□□□□□ -0.54
SYNPO-204ENST00000519664 LOC100506127A0A0U1RQW1 187 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 ENPP3O14638 875 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 MAP3K13O43283 966 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 VPS4BO75351 444 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 RFPL1O75677 317 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 UGT2B4P06133 528 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 ZNF37AP17032 561 aaPredicted RBP11.67□□□□□ -0.54
SYNPO-204ENST00000519664 GLUD2P49448 558 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 CLCQ05315 142 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 ANKRD46Q86W74 232 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 TERB1Q8NA31 727 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 SPPL2BQ8TCT7 592 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 EPB41L4BQ9H329 900 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 ALG2Q9H553 416 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 MRPL17Q9NRX2 175 aaKnown RBP11.67□□□□□ -0.54
SYNPO-204ENST00000519664 CNTN6Q9UQ52 1028 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 MYH1P12882 1939 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.66□□□□□ -0.54
SYNPO-204ENST00000519664 KPNA4O00629 521 aaPredicted RBP11.66□□□□□ -0.54
SYNPO-204ENST00000519664 COL6A2P12110 1019 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 POLD2P49005 469 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 NR1H2P55055 460 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 CNTN1Q12860 1018 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 SETMARQ53H47 684 aaPredicted RBP11.66□□□□□ -0.54
SYNPO-204ENST00000519664 ATXN7L2Q5T6C5 722 aaPredicted RBP11.66□□□□□ -0.54
SYNPO-204ENST00000519664 IL23RQ5VWK5 629 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 ZCCHC8Q6NZY4 707 aaKnown RBP11.66□□□□□ -0.54
SYNPO-204ENST00000519664 USP45Q70EL2 814 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 BBS7Q8IWZ6 715 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 PGAM4Q8N0Y7 254 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 ZCCHC7Q8N3Z6 543 aaKnown RBP11.66□□□□□ -0.54
SYNPO-204ENST00000519664 ZFYVE19Q96K21 471 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 APOLD1Q96LR9 279 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 DEFB118Q96PH6 123 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 CDK15Q96Q40 435 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 TCF12Q99081 682 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 COPS8Q99627 209 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 PAAF1Q9BRP4 392 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 SYT11Q9BT88 431 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 TRIM45Q9H8W5 580 aaPredicted RBP11.66□□□□□ -0.54
SYNPO-204ENST00000519664 CRTAC1Q9NQ79 661 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 EIF2B4Q9UI10 523 aaKnown RBP11.66□□□□□ -0.54
SYNPO-204ENST00000519664 FCF1Q9Y324 198 aaKnown RBP11.66□□□□□ -0.54
SYNPO-204ENST00000519664 DLX3O60479 287 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 NBNO60934 754 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 STBD1O95210 358 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 IDO1P14902 403 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 GALK1P51570 392 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 ATP6V0D1P61421 351 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 SLC18A2Q05940 514 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 INCA1Q0VD86 236 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 FBXL19Q6PCT2 694 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 NACC2Q96BF6 587 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 PANX1Q96RD7 426 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 TRMOQ9BU70 441 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 ATP13A3Q9H7F0 1226 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 PREBQ9HCU5 417 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 CACNA2D2Q9NY47 1150 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 CCDC162PA2VCL2 907 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 CYP3A5P20815 502 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 INHBEP58166 350 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 ITGADQ13349 1161 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 PABPC1LQ4VXU2 614 aaKnown RBP11.66□□□□□ -0.54
SYNPO-204ENST00000519664 ANO7Q6IWH7 933 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 FAM9CQ8IZT9 166 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 C8orf59Q8N0T1 100 aaPredicted RBP11.66□□□□□ -0.54
SYNPO-204ENST00000519664 CPSF7Q8N684 471 aaKnown RBP11.66□□□□□ -0.54
SYNPO-204ENST00000519664 IPPKQ9H8X2 491 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 ZFYVE1Q9HBF4 777 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 STK39Q9UEW8 545 aa11.66□□□□□ -0.54
SYNPO-204ENST00000519664 OTCP00480 354 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 ACVRL1P37023 503 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms