RNA–Protein interactions for RNA: ENST00000513284.5

RNF4-218, Transcript of ring finger protein 4, human

TSL 4

Gene RNF4, Length 517 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-218	ENST00000513284		A6NCN8	305 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	HNRNPR	O43390	633 aa	Known RBP	11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	PRAMEF11	O60813	436 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	GADD45B	O75293	160 aa	Predicted RBP	11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	SPAG6	O75602	509 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	NDUFA10	O95299	355 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	C9	P02748	559 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	ANKRD34C	P0C6C1	535 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	ERCC5	P28715	1186 aa	Predicted RBP	11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	RPS18	P62269	152 aa	Known RBP	11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	HHEX	Q03014	270 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	MAN2A1	Q16706	1144 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	PLEKHN1	Q494U1	663 aa	Predicted RBP	11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	CFAP58	Q5T655	872 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	SLC6A19	Q695T7	634 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	SP5	Q6BEB4	398 aa	Predicted RBP	11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	FAM199X	Q6PEV8	388 aa	Predicted RBP	11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	DOK6	Q6PKX4	331 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284		Q6ZVL8	140 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	MLKL	Q8NB16	471 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	JOSD2	Q8TAC2	188 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	FNIP1	Q8TF40	1166 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	CPA5	Q8WXQ8	436 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	DTD2	Q96FN9	168 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	C9orf72	Q96LT7	481 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	OR2M4	Q96R27	311 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	OR6C1	Q96RD1	312 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	ING2	Q9H160	280 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	ACTL8	Q9H568	366 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	ATP13A3	Q9H7F0	1226 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	SARS2	Q9NP81	518 aa	Known RBP	11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	LHX9	Q9NQ69	397 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	METTL5	Q9NRN9	209 aa	Known RBP	11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	TBC1D29	Q9UFV1	150 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	DNAJC12	Q9UKB3	198 aa		11.1	□□□□□ -0.63
RNF4-218	ENST00000513284	ARGFX	A6NJG6	315 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	C2CD4B	A6NLJ0	364 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	HEXIM1	O94992	359 aa	Known RBP	11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	FGF5	P12034	268 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	LHCGR	P22888	699 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	TEAD1	P28347	426 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	EPHB2	P29323	1055 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	SERPINA4	P29622	427 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	MAPK9	P45984	424 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	LEPR	P48357	1165 aa	Known RBP	11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	PPM1F	P49593	454 aa	Predicted RBP	11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	UBE2H	P62256	183 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	BCL2L1	Q07817	233 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	PEX6	Q13608	980 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	IL10RA	Q13651	578 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	UGT8	Q16880	541 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	PARP15	Q460N3	678 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	CRB2	Q5IJ48	1285 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	MARK2	Q7KZI7	788 aa	Known RBP	11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	TECPR1	Q7Z6L1	1165 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	TRIM74	Q86UV6	250 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	FDCSP	Q8NFU4	85 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	THAP4	Q8WY91	577 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	SPOCK2	Q92563	424 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	STAMBPL1	Q96FJ0	436 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	AGAP2	Q99490	1192 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	BARD1	Q99728	777 aa	Known RBP	11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	NUDT9	Q9BW91	350 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	ZMYND15	Q9H091	742 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	SLAMF7	Q9NQ25	335 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	ENTPD4	Q9Y227	616 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	PRKAB1	Q9Y478	270 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	SLC30A1	Q9Y6M5	507 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	POLE	Q07864	2286 aa		11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	MN1	Q10571	1320 aa	Predicted RBP	11.09	□□□□□ -0.63
RNF4-218	ENST00000513284	KIF1C	O43896	1103 aa	Known RBP	11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	CCNYL3	P0C7X3	344 aa		11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	CYP11B1	P15538	503 aa		11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	HNRNPH3	P31942	346 aa	Known RBP	11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	GARS	P41250	739 aa	Known RBP	11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	SEPHS1	P49903	392 aa		11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	PAPOLA	P51003	745 aa	Known RBP	11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	EPHA4	P54764	986 aa		11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	POLR2L	P62875	67 aa	Known RBP	11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	DPT	Q07507	201 aa		11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	NSUN2	Q08J23	767 aa	Known RBP eCLIP	11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	IL11RA	Q14626	422 aa		11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	ZRANB3	Q5FWF4	1079 aa		11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	DENND2C	Q68D51	928 aa		11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	STRADA	Q7RTN6	431 aa		11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	TSPAN33	Q86UF1	283 aa		11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	ZC3H18	Q86VM9	953 aa	Known RBP	11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	RASGRP3	Q8IV61	690 aa		11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	MCEMP1	Q8IX19	187 aa		11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	CISD2	Q8N5K1	135 aa	Known RBP	11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	NTAN1	Q96AB6	310 aa		11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	PNPLA2	Q96AD5	504 aa		11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	MOCOS	Q96EN8	888 aa		11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	SLC29A3	Q9BZD2	475 aa		11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	SLC39A8	Q9C0K1	460 aa		11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	BRD8	Q9H0E9	1235 aa		11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	MAP10	Q9P2G4	905 aa		11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	ZNF451	Q9Y4E5	1061 aa		11.08	□□□□□ -0.64
RNF4-218	ENST00000513284	MED13L	Q71F56	2210 aa		11.07	□□□□□ -0.64
RNF4-218	ENST00000513284	PCSK5	Q92824	1860 aa		11.07	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms