RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 REEP1Q9H902 201 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 ASB3Q9Y575 518 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 U3KQV3 271 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 PAPPAQ13219 1627 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 GNG14A0A1W2PPG7 69 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 OR51F1A6NGY5 319 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 SEC24AO95486 1093 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 OR4Q2P0C623 313 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 CDK9P50750 372 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 HERVK_113P63132 956 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 NRG1Q02297 640 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 AP5B1Q2VPB7 878 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 TXNDC5Q8NBS9 432 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 ZNF540Q8NDQ6 660 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 ERVK-6Q9BXR3 956 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 C20orf27Q9GZN8 174 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 NOL6Q9H6R4 1146 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 SMPD4Q9NXE4 827 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 GDAP2Q9NXN4 497 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 ARL15Q9NXU5 204 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 CACNG4Q9UBN1 327 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 ZNHIT2Q9UHR6 403 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 DGKBQ9Y6T7 804 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 KLHL33A6NCF5 533 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 SDHDO14521 159 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 ONECUT3O60422 494 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 MED26O95402 600 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 ALDH2P05091 517 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 PKMP14618 531 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 NR4A1P22736 598 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 DNAJB1P25685 340 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 CD52P31358 61 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 MAGEA6P43360 314 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 CCR3P51677 355 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 SFSWAPQ12872 951 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 TSNQ15631 228 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 CRY1Q16526 586 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 TAZQ16635 292 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 ARMC12Q5T9G4 340 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 NECAB2Q7Z6G3 386 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 ELMOD1Q8N336 334 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 PACRGLQ8N7B6 248 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 SCAMP5Q8TAC9 235 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 CDK5RAP1Q96SZ6 601 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 SORT1Q99523 831 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 TXNRD2Q9NNW7 524 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 LAMB1P07942 1786 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 TCRBV5S1A1TA0A578 114 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 A8MX80 341 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 NADKO95544 446 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 UROSP10746 265 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 EPB42P16452 691 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 ALOX12P18054 663 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 PIK3CGP48736 1102 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 SPIDRQ14159 915 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 ERMP1Q7Z2K6 904 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 TP53INP2Q8IXH6 220 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 OR8H2Q8N162 312 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 PSMG2Q969U7 264 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 ESAMQ96AP7 390 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 UROC1Q96N76 676 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 OR52E6Q96RD3 313 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 HBEGFQ99075 208 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 ACBD6Q9BR61 282 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 ASB8Q9H765 288 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 SH3BP4Q9P0V3 963 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 MOXD2PA6NHM9 499 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 ARPC2O15144 300 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 HTRA2O43464 458 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 ASNA1O43681 348 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 HDCP19113 662 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 KRT33BQ14525 404 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 RFTN1Q14699 578 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 ZNF423Q2M1K9 1284 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 RFX4Q33E94 735 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 DEPDC1Q5TB30 811 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 SLCO6A1Q86UG4 719 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 CFAP52Q8N1V2 620 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 ANKLE1Q8NAG6 615 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 ZFP28Q8NHY6 868 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 LRRC58Q96CX6 371 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 GLT1D1Q96MS3 346 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 FBRSL1Q9HCM7 1045 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 CD320Q9NPF0 282 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 DNAAF2Q9NVR5 837 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 TRNAU1APQ9NX07 287 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 EMCNQ9ULC0 261 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 DUSP12Q9UNI6 340 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 DDX60LQ5H9U9 1706 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 SLC28A1O00337 649 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 EPN2O95208 641 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 NDST3O95803 873 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 ABCB1P08183 1280 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 CYP4B1P13584 511 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 ATP5C1P36542 298 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 PPP1R3AQ16821 1122 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 RETSATQ6NUM9 610 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 SAPCD2Q86UD0 394 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 SYT12Q8IV01 421 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms