RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 CAPN11Q9UMQ6 739 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 PCDHGA4Q9Y5G9 962 aa11.48□□□□□ -0.57
HMGCS1-204ENST00000507293 ZNF106Q9H2Y7 1883 aaKnown RBP11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 IGHV1OR21-1A0A087WYE8 117 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 SYCE3A1L190 88 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 PYCARD-AS1I3L0S3 204 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 PROSCO94903 275 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 ASMTLO95671 621 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 PRLP01236 227 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 GYPCP04921 128 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 HLA-DQB2P05538 268 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 PYGLP06737 847 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 CA4P22748 312 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 CCNCP24863 283 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 MPSTP25325 297 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 CD82P27701 267 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 LIMK2P53671 638 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 TAS2R40P59535 323 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 GBE1Q04446 702 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 NIPAL4Q0D2K0 466 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 ANKRD20A8PQ5CZ79 823 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 TMEM164Q5U3C3 297 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 ZNF761Q86XN6 746 aaPredicted RBP11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 DTX1Q86Y01 620 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 GALNT13Q8IUC8 556 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 NRSN1Q8IZ57 195 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 KCTD6Q8NC69 237 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 ARRDC2Q8TBH0 407 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 JPH3Q8WXH2 748 aaPredicted RBP11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 EXTL1Q92935 676 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 FATE1Q969F0 183 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 PMEPA1Q969W9 287 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 COX14Q96I36 57 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 TSGA13Q96PP4 275 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 ZMYND15Q9H091 742 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 PCDH9Q9HC56 1237 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 KCNK4Q9NYG8 393 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 TMEM9Q9P0T7 183 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 CTTNBP2NLQ9P2B4 639 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 AMACRQ9UHK6 382 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 DNPEPQ9ULA0 475 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 NENFQ9UMX5 172 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 PCDHB11Q9Y5F2 797 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 PCYT1BQ9Y5K3 369 aaPredicted RBP11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 KALRNO60229 2985 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 CFAP46Q8IYW2 2715 aa11.47□□□□□ -0.57
HMGCS1-204ENST00000507293 ATMQ13315 3056 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 TRBV23OR9-2A0A075B6M9 112 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 SLC28A2O43868 658 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 CLDN7O95471 211 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 EML2O95834 649 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 ATP1A1P05023 1023 aaKnown RBP11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 ITGB2P05107 769 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 THRAP10827 490 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 FGF3P11487 239 aaPredicted RBP11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 CES1P23141 567 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 PPM1FP49593 454 aaPredicted RBP11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 ARSDP51689 593 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 NFATC3Q12968 1075 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 TRA2AQ13595 282 aaKnown RBP eCLIP11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 LRP8Q14114 963 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 PDK2Q15119 407 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 NLRP8Q86W28 1048 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 PQLC3Q8N755 202 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 OR4D9Q8NGE8 314 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 EXD1Q8NHP7 514 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 SLC37A2Q8TED4 501 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 FAF2Q96CS3 445 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 IQCDQ96DY2 449 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 TAAR9Q96RI9 348 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 WDR24Q96S15 920 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 ARHGAP9Q9BRR9 750 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 B3GNT4Q9C0J1 378 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 HAUS2Q9NVX0 235 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 LUC7L2Q9Y383 392 aaKnown RBP11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 PRKAB1Q9Y478 270 aa11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 OAS3Q9Y6K5 1087 aaKnown RBP11.46□□□□□ -0.57
HMGCS1-204ENST00000507293 C1orf232A0A0U1RR37 186 aa11.45□□□□□ -0.58
HMGCS1-204ENST00000507293 FADS2P1A8MWK0 482 aa11.45□□□□□ -0.58
HMGCS1-204ENST00000507293 STMND1H3BQB6 276 aa11.45□□□□□ -0.58
HMGCS1-204ENST00000507293 DNAJC6O75061 913 aa11.45□□□□□ -0.58
HMGCS1-204ENST00000507293 KRT7P08729 469 aa11.45□□□□□ -0.58
HMGCS1-204ENST00000507293 FAM87AP0C7U9 286 aa11.45□□□□□ -0.58
HMGCS1-204ENST00000507293 MX2P20592 715 aa11.45□□□□□ -0.58
HMGCS1-204ENST00000507293 CSTF2P33240 577 aaKnown RBP eCLIP11.45□□□□□ -0.58
HMGCS1-204ENST00000507293 FASLGP48023 281 aa11.45□□□□□ -0.58
HMGCS1-204ENST00000507293 ATP1A2P50993 1020 aa11.45□□□□□ -0.58
HMGCS1-204ENST00000507293 RPL26P61254 145 aaKnown RBP11.45□□□□□ -0.58
HMGCS1-204ENST00000507293 CYP4F2P78329 520 aa11.45□□□□□ -0.58
HMGCS1-204ENST00000507293 SLC10A2Q12908 348 aaPredicted RBP11.45□□□□□ -0.58
HMGCS1-204ENST00000507293 SQSTM1Q13501 440 aa11.45□□□□□ -0.58
HMGCS1-204ENST00000507293 QPCTQ16769 361 aa11.45□□□□□ -0.58
HMGCS1-204ENST00000507293 ZFYVE27Q5T4F4 411 aa11.45□□□□□ -0.58
HMGCS1-204ENST00000507293 CHST15Q7LFX5 561 aaPredicted RBP11.45□□□□□ -0.58
HMGCS1-204ENST00000507293 MAP7D3Q8IWC1 876 aa11.45□□□□□ -0.58
HMGCS1-204ENST00000507293 CCDC13Q8IYE1 715 aa11.45□□□□□ -0.58
HMGCS1-204ENST00000507293 SFRP1Q8N474 314 aa11.45□□□□□ -0.58
HMGCS1-204ENST00000507293 ZSCAN1Q8NBB4 408 aa11.45□□□□□ -0.58
HMGCS1-204ENST00000507293 CCNYQ8ND76 341 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms